Cd79a (CD79a molecule) - Rat Genome Database

Name: Cd79a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cd79a (CD79a molecule) Ictidomys tridecemlineatus

Analyze

Symbol:

Cd79a

Name:

CD79a molecule

RGD ID:

12683631

Description:

ENCODES a protein that exhibits identical protein binding (inferred); transmembrane signaling receptor activity (inferred); INVOLVED IN B cell receptor signaling pathway (ortholog); ASSOCIATED WITH agammaglobulinemia (ortholog); agammaglobulinemia 1 (ortholog); agammaglobulinemia 3 (ortholog); FOUND IN B cell receptor complex (inferred); external side of plasma membrane (inferred); IgM B cell receptor complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

B-cell antigen receptor complex-associated protein alpha chain

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD79A (CD79a molecule)	NCBI	Ortholog
Mus musculus (house mouse):	Cd79a (CD79A antigen (immunoglobulin-associated alpha))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cd79a (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd79a (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD79A (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD79A (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD79A (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD79A (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd79a (CD79a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	16,213,842 - 16,217,393 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	561,140 - 564,661 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	561,195 - 564,577 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

agammaglobulinemia (ISO)

agammaglobulinemia 1 (ISO)

agammaglobulinemia 3 (ISO)

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

COVID-19 (ISO)

craniosynostosis (ISO)

Diamond-Blackfan anemia (ISO)

diffuse large B-cell lymphoma (ISO)

genetic disease (ISO)

maple syrup urine disease (ISO)

primary immunodeficiency disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell activation (IEA)

B cell differentiation (IEA)

B cell proliferation (IEA)

B cell receptor signaling pathway (IEA,ISO)

Cellular Component

B cell receptor complex (IEA)

external side of plasma membrane (IEA)

IgM B cell receptor complex (IEA)

membrane (IEA)

membrane raft (IEA)

multivesicular body (IEA)

plasma membrane (IEA)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

transmembrane signaling receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cd79a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	16,213,842 - 16,217,393 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	561,140 - 564,661 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	561,195 - 564,577 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD79A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	41,877,279 - 41,881,372 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	41,877,279 - 41,881,372 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	42,381,349 - 42,385,439 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	47,073,030 - 47,077,279 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	47,073,178 - 47,077,278	NCBI
Celera	19	39,180,875 - 39,185,124 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	38,812,471 - 38,816,723 (+)	NCBI		HuRef
CHM1_1	19	42,382,655 - 42,386,907 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	44,696,761 - 44,700,859 (+)	NCBI		T2T-CHM13v2.0

Cd79a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	24,596,922 - 24,601,283 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	24,596,806 - 24,601,622 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	24,897,497 - 24,901,858 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	24,897,381 - 24,902,197 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,682,530 - 25,687,216 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	24,606,271 - 24,610,957 (+)	NCBI		MGSCv36	mm8
Celera	7	19,513,406 - 19,518,092 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.49	NCBI

Cd79a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	89,621,460 - 89,625,813 (+)	NCBI		GRCr8
mRatBN7.2	1	80,493,581 - 80,497,936 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	80,493,581 - 80,497,935 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	85,886,132 - 85,890,482 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	94,436,945 - 94,441,299 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	87,641,892 - 87,646,243 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	81,763,609 - 81,768,039 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	81,763,614 - 81,767,980 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,020,638 - 83,024,665 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	74,941,067 - 74,945,272 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Cd79a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	961,522 - 965,605 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	961,522 - 965,605 (-)	NCBI	ChiLan1.0	ChiLan1.0

CD79A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,981,999 - 47,986,396 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,850,959 - 49,856,232 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,765,067 - 38,769,556 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	47,270,377 - 47,274,711 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	47,270,377 - 47,274,711 (+)	Ensembl	panpan1.1		panPan2

CD79A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	112,411,281 - 112,414,827 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	112,411,281 - 112,427,381 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	111,847,599 - 111,851,145 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,035,214 - 113,038,758 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,035,113 - 113,038,688 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	112,588,584 - 112,592,129 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	112,224,735 - 112,228,272 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	113,151,211 - 113,154,758 (-)	NCBI		UU_Cfam_GSD_1.0

CD79A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	49,995,765 - 49,999,340 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	49,996,116 - 49,999,294 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	46,049,091 - 46,054,273 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD79A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	36,078,057 - 36,089,367 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	14,319,561 - 14,325,024 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cd79a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	803,359 - 806,897 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	803,439 - 806,879 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000003512 ⟹ ENSSTOP00000003144

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936706	561,140 - 564,661 (-)	Ensembl

RefSeq Acc Id:

XM_005338174 ⟹ XP_005338231

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,213,842 - 16,217,393 (-)	NCBI
SpeTri2.0	NW_004936706	561,195 - 564,577 (-)	NCBI

Sequence:

show sequence

GCCTAGCAGCGAAGACCAGTGGAGCCCATCTCCGGCAGGGTAGGGCAGGAAGTGGGGCGGGGTT
TGAAGTGGAATCTGGTACCCCAAAACTGCTGCAGCACCACTCACCTACCAGTTGGGAGAAGATG
CTTGGGAGTTCAGGAGTCCTTCCAGCTCTGCCTGCCACCATCTGCGGCCTCTTCTTGCTGTCCG
CAGCCTGCCTGGGCCCTGGATGCCAGGCCCTGTGGGTGCATGGGGGCCCACCATCTGTGACAGT
GAGCTTGGGGGACGAGGCCCGACTCCAGTGCAAGAACAATGCCACCAGGCCCAATGTCACCTGG
TGGCTCATCATCCAGGGCAACCACTCCTATCCACCCCAGTTCCTGGGCTCCGGCCAAGGCTCTA
AGGGCGAGTGGACCATTCCAAAAGTGAACAAGAGCCACGGGGGTGTGTACCAGTGCCGAGTGGA
AGATAATGGACAATCCATGACTTCCTGCGGTACCTACCTGCGTATTCGAGAGCCACCCCCCAGA
CCCTTCCTGGACATGGGAGAGGGCACCAAGAACCGCATCATCACAGCCGAGGGCATCATCCTGC
TGTTCTGTGCTGTGGTGCCGGGGACACTGCTGTTGTTCAGGAAGCGCTGGCAGAATGAAAGGTT
TGGGGTGGATACCCAGGATGACTACGAAGATGAAAATCTTTATGAAGGCCTGAACATTGATGAC
TGCTCCATGTATGAGGACATCTCCAGGGGCCTCCAGGGTACCTACCAGGACGTGGGCAGCCTCC
ACATCGGAGATGTCCAACTGGAGAAGCCGTGACTCTTCCCTCTACACAGGAACCCTGCTAGATA
GACCTATCCTGCCTGCTCTGAGCAGCCAACTCCAGCTTCTCTCCTGGAATGTTCTCTCCTCTTT
CCTGGGAGCTTCCTGAGTCATCTTCCCCCTTGGAGTGTCCCACTCTTCCCTGGAGGCTGCCCTC
CCCCACTAACCCAGCCCTCCCCTGTTGCCTTTCCCAGGCTCCCTCCCCAGCGGGTAATGAGCCC
TTAATCGCTGCCTCTAGGGGAGCTGATTACAACAGCCTCGTTAGTGTCACCCCCTCCTCCCGGA
TCTGTCATGGCCACTTAGTGATAATAAATCCTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005338231	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003144.3
GenBank Protein	KAG3256172	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005338231 ⟸ XM_005338174

- UniProtKB:

I3M2E7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLGSSGVLPALPATICGLFLLSAACLGPGCQALWVHGGPPSVTVSLGDEARLQCKNNATRPNVT
WWLIIQGNHSYPPQFLGSGQGSKGEWTIPKVNKSHGGVYQCRVEDNGQSMTSCGTYLRIREPPP
RPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNERFGVDTQDDYEDENLYEGLNID
DCSMYEDISRGLQGTYQDVGSLHIGDVQLEKP

hide sequence

RefSeq Acc Id:

ENSSTOP00000003144 ⟸ ENSSTOT00000003512

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003518	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003512.3	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD79a/CD79b	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Phos_immunorcpt_sig_ITAM	UniProtKB/TrEMBL
NCBI Gene	Cd79a	ENTREZGENE
PANTHER	B-CELL ANTIGEN RECEPTOR COMPLEX-ASSOCIATED PROTEIN ALPHA CHAIN	UniProtKB/TrEMBL
	PTHR14334	UniProtKB/TrEMBL
Pfam	Ig_3	UniProtKB/TrEMBL
	ITAM	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	ITAM_1	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	ITAM	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	I3M2E7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM