Bbs1 (Bardet-Biedl syndrome 1) - Rat Genome Database

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Gene: Bbs1 (Bardet-Biedl syndrome 1) Ictidomys tridecemlineatus
Analyze
Symbol: Bbs1
Name: Bardet-Biedl syndrome 1
RGD ID: 12680649
Description: ENCODES a protein that exhibits patched binding (inferred); phosphoprotein binding (inferred); RNA polymerase II-specific DNA-binding transcription factor binding (inferred); INVOLVED IN adult behavior (ortholog); brain morphogenesis (ortholog); cartilage development (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); FOUND IN BBSome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,607,347 - 6,634,045 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,059,148 - 3,076,299 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,059,274 - 3,076,853 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bbs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,607,347 - 6,634,045 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,059,148 - 3,076,299 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,059,274 - 3,076,853 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,510,635 - 66,533,598 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,510,606 - 66,533,613 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,278,106 - 66,301,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,034,695 - 66,057,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 341166,034,694 - 66,057,660NCBI
Celera1163,598,354 - 63,621,361 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,606,029 - 62,628,992 (+)NCBIHuRef
CHM1_11166,161,845 - 66,184,809 (+)NCBICHM1_1
T2T-CHM13v2.01166,506,874 - 66,529,839 (+)NCBIT2T-CHM13v2.0
Bbs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,936,906 - 4,956,681 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,936,906 - 4,956,656 (-)EnsemblGRCm39 Ensembl
GRCm38194,886,878 - 4,906,653 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,886,878 - 4,906,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,886,882 - 4,906,627 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,889,158 - 4,906,612 (-)NCBIMGSCv36mm8
Celera194,757,796 - 4,779,714 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.14NCBI
Bbs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,614,195 - 211,633,504 (-)NCBIGRCr8
mRatBN7.21202,184,812 - 202,204,118 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,186,125 - 202,204,086 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,539,190 - 210,557,170 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,631,564 - 217,649,496 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,322,591 - 210,340,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,146,084 - 220,165,545 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,147,327 - 220,165,678 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,078,590 - 227,096,525 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,503,399 - 207,521,683 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,658,767 - 207,675,153 (-)NCBI
Celera1199,725,764 - 199,743,588 (-)NCBICelera
Cytogenetic Map1q43NCBI
Bbs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,825,756 - 18,844,036 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,825,756 - 18,843,820 (-)NCBIChiLan1.0ChiLan1.0
BBS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,736,682 - 67,760,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,779,386 - 68,803,756 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,868,257 - 61,892,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,192,346 - 65,216,274 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,192,355 - 65,216,274 (+)Ensemblpanpan1.1panPan2
BBS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,816,126 - 50,835,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,426,815 - 49,443,963 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,854,538 - 51,873,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,853,428 - 51,873,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,955,485 - 50,974,765 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,531,013 - 50,548,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,320,949 - 51,338,319 (-)NCBIUU_Cfam_GSD_1.0
BBS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,886,990 - 5,906,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,886,989 - 5,906,468 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,963,170 - 4,982,613 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BBS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,737,887 - 7,765,022 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,737,578 - 7,764,732 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,022,016 - 105,048,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bbs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,875,535 - 19,893,694 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,875,597 - 19,893,652 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000027207   ⟹   ENSSTOP00000023809
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365993,059,148 - 3,076,299 (-)Ensembl
RefSeq Acc Id: XM_005333378   ⟹   XP_005333435
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,616,925 - 6,634,045 (-)NCBI
SpeTri2.0NW_0049365993,059,274 - 3,076,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284064   ⟹   XP_040139998
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,607,347 - 6,634,045 (-)NCBI
RefSeq Acc Id: XM_040284065   ⟹   XP_040139999
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,616,925 - 6,634,045 (-)NCBI
RefSeq Acc Id: XM_040284066   ⟹   XP_040140000
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,607,347 - 6,634,045 (-)NCBI
RefSeq Acc Id: XR_005733429
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,616,732 - 6,634,045 (-)NCBI
RefSeq Acc Id: XR_005733430
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,607,347 - 6,634,045 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005333435 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139998 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139999 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023809.1
GenBank Protein KAG3284624 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333435   ⟸   XM_005333378
- Peptide Label: isoform X4
- UniProtKB: I3NHG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140000   ⟸   XM_040284066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040139998   ⟸   XM_040284064
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040139999   ⟸   XM_040284065
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000023809   ⟸   ENSSTOT00000027207

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022467 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027207.2 UniProtKB/TrEMBL
InterPro BBS1 UniProtKB/TrEMBL
  BBS1_N UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
NCBI Gene Bbs1 ENTREZGENE
PANTHER BARDET-BIEDL SYNDROME 1 PROTEIN UniProtKB/TrEMBL
  PTHR20870 UniProtKB/TrEMBL
Pfam BBS1 UniProtKB/TrEMBL
Superfamily-SCOP SSF50998 UniProtKB/TrEMBL
UniProt I3NHG2 ENTREZGENE, UniProtKB/TrEMBL