Nr4a1 (nuclear receptor subfamily 4 group A member 1)

Gene: Nr4a1 (nuclear receptor subfamily 4 group A member 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Nr4a1

Name:

nuclear receptor subfamily 4 group A member 1

RGD ID:

12677219

Description:

ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to organic substance (ortholog); neurotransmitter secretion involved in regulation of skeletal muscle contraction (ortholog); ASSOCIATED WITH Albuminuria (ortholog); blood pressure trait (ortholog); blood urea nitrogen amount (ortholog); FOUND IN chromatin (inferred); cytosol (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nuclear receptor subfamily 4 group A member 1, transcript variant X1; nuclear receptor subfamily 4 group A member 1, transcript variant X2; nuclear receptor subfamily 4 group A member 1, transcript variant X3; nuclear receptor subfamily 4 group A member 1, transcript variant X4; nuclear receptor subfamily 4 group A member 1, transcript variant X5; nuclear receptor subfamily 4 group A member 1, transcript variant X6

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	9,499,754 - 9,508,423 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	9,486,096 - 9,508,338 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Experimental Data Annotations Click to see Annotation Detail View

Vertebrate Trait

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
blood pressure trait		ISO	Nr4a1 (Rattus norvegicus)	9068941		RGD	PMID:24722447 and REF_RGD_ID:12910103
blood urea nitrogen amount		ISO	Nr4a1 (Rattus norvegicus)	9068941		RGD	PMID:24722447 and REF_RGD_ID:12910103
cholesterol amount		ISO	Nr4a1 (Rattus norvegicus)	9068941		RGD	PMID:24722447 and REF_RGD_ID:12910103
macrophage migration trait		ISO	Nr4a1 (Rattus norvegicus)	9068941		RGD	PMID:24722447 and REF_RGD_ID:12910103
triglyceride amount		ISO	Nr4a1 (Rattus norvegicus)	9068941		RGD	PMID:24722447 and REF_RGD_ID:12910103

Disease Annotations Click to see Annotation Detail View

Albuminuria (ISO)

chronic kidney disease (ISO)

Dyskinesias (ISO)

endometriosis (ISO)

genetic disease (ISO)

Hypercholesterolemia (ISO)

Hypertriglyceridemia (ISO)

Insulin Resistance (ISO)

kidney disease (ISO)

Kidney Reperfusion Injury (ISO)

major depressive disorder (ISO)

mesangial proliferative glomerulonephritis (ISO)

Myocardial Ischemia (ISO)

pancreatic cancer (ISO)

Parkinson's disease (ISO)

proteinuria (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA,ISO)

cell migration involved in sprouting angiogenesis (IEA)

cellular response to corticotropin-releasing hormone stimulus (IEA)

cellular response to fibroblast growth factor stimulus (IEA)

cellular response to organic substance (IEA,ISO)

cellular response to vascular endothelial growth factor stimulus (IEA)

detection of lipopolysaccharide (IEA)

endothelial cell chemotaxis (IEA)

fat cell differentiation (IEA)

inflammatory response (IEA)

intracellular receptor signaling pathway (IEA)

negative regulation of cell cycle (IEA)

neurotransmitter secretion involved in regulation of skeletal muscle contraction (ISO)

non-canonical inflammasome complex assembly (IEA)

positive regulation of apoptotic process (IEA,ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of endothelial cell proliferation (IEA)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

regulation of type B pancreatic cell proliferation (ISO)

response to amphetamine (ISO)

response to electrical stimulus (ISO)

response to lipopolysaccharide (ISO)

skeletal muscle cell differentiation (IEA,ISO)

transcription by RNA polymerase II (IEA,ISO)

Cellular Component

chromatin (IEA)

cytosol (IEA)

mitochondrion (IEA)

nuclear membrane (IEA)

nucleoplasm (IEA)

nucleus (IEA)

transcription regulator complex (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

double-stranded DNA binding (IEA)

identical protein binding (IEA)

lipopolysaccharide binding (IEA)

metal ion binding (IEA)

nuclear glucocorticoid receptor binding (IEA)

nuclear receptor activity (IEA)

protein binding (ISO)

protein heterodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

Experimental Data Annotations Click to see Annotation Detail View

Vertebrate Trait

blood pressure trait (ISO)

blood urea nitrogen amount (ISO)

cholesterol amount (ISO)

macrophage migration trait (ISO)

triglyceride amount (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Nr4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	9,499,754 - 9,508,423 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	9,486,096 - 9,508,338 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NR4A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	52,022,832 - 52,059,503 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	52,022,832 - 52,059,507 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	52,416,616 - 52,453,287 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	50,731,458 - 50,739,554 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	50,723,762 - 50,736,019	NCBI
Celera	12	51,247,867 - 51,255,961 (+)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	49,449,770 - 49,486,519 (+)	NCBI		HuRef
CHM1_1	12	52,382,884 - 52,419,560 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	51,986,402 - 52,023,082 (+)	NCBI		T2T-CHM13v2.0

Nr4a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	101,151,783 - 101,172,676 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	101,152,150 - 101,172,676 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	101,253,902 - 101,274,795 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	101,254,269 - 101,274,795 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	101,097,277 - 101,105,226 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	101,094,896 - 101,102,826 (+)	NCBI		MGSCv36	mm8
Celera	15	103,414,983 - 103,422,853 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	56.64	NCBI

Nr4a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	134,247,153 - 134,268,044 (+)	NCBI		GRCr8
mRatBN7.2	7	132,368,399 - 132,389,300 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	132,374,840 - 132,389,297 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	134,182,933 - 134,190,833 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	136,412,449 - 136,420,349 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	136,322,869 - 136,330,773 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	142,899,358 - 142,920,216 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	142,905,758 - 142,920,216 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	140,700,242 - 140,721,073 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	140,012,807 - 140,020,590 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	140,089,243 - 140,097,024 (+)	NCBI
Celera	7	128,846,928 - 128,854,640 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Nr4a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	2,404,532 - 2,431,050 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955547	2,404,532 - 2,426,882 (+)	NCBI	ChiLan1.0	ChiLan1.0

NR4A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	42,136,340 - 42,158,166 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	42,133,103 - 42,154,924 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	36,703,903 - 36,740,211 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	37,480,300 - 37,498,290 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	37,480,300 - 37,501,188 (-)	Ensembl	panpan1.1		panPan2

NR4A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	2,947,729 - 2,965,045 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	2,891,053 - 2,955,655 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	43,300,499 - 43,308,433 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	2,944,790 - 2,966,939 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	2,939,797 - 2,965,600 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	2,961,332 - 2,969,256 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	2,947,820 - 2,955,733 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	43,698,715 - 43,706,655 (+)	NCBI		UU_Cfam_GSD_1.0

NR4A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	48,208,354 - 48,232,857 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	48,208,587 - 48,233,063 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	197,859,302 - 197,884,070 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nr4a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	267,303 - 293,227 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	271,345 - 288,265 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000026154 ⟹ ENSSTOP00000015534

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936512	9,499,754 - 9,508,423 (+)	Ensembl

RefSeq Acc Id:

XM_005324980 ⟹ XP_005325037

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,665,001 (-)	NCBI
SpeTri2.0	NW_004936512	9,499,796 - 9,508,338 (+)	NCBI

Sequence:

show sequence

CGCCCTTGTATGGCCACAGCTTGCCGGGGCCGCGTGCGTCAGTGGCGCCCCCGCCCCTCCCCGT
GCGTCACGGAGCGTTTAAGAGGAGGGTCCGGCTGGTTCGGGGAGCCCCAGTGTCGGAGGCTGTG
AAAGTTGGGGGAGTGCGTGAGACCAACCAAGGAGCGCACGCGGGACCAGGCTGCGACTTGGGGC
GCTGGTCCCGGGCAGGGGGAACAGGAGCCGTCCGGAGTAATGCCCTGTATCCAAGCCCAATATG
GGACACCAGCACCAAGCCCAGGACCCCGTGACCACCTGGCAAGCGACGCCCTGACCCCTGAACT
CAGCAAGCCCACCATGGACCTGGCCAGCCCTGAGGCGGCCCCTGCTGCCCCCACTGCCCTGCCC
AGCTTCAGCACCTTCATGGATGGCTACACGGGAGAGTTTGATACCTTCCTCTACCAGCTGCCCG
GGACAGCCCAGCCATGCTCCTCGGCTTCCTCCTCCGCCTCCTCCACATCCTCCTCCTCGGCCAC
CTCCCCTGCCTCTGCTTCCTTCAAATTTGAAGACTTCCAGGTGTACGGCTGCTACCCTGGCACC
CTGAGTGGTCCACTAGATGAGACCTTATCCTCCAGTGGCTCTGACTACTATGGCAGCCCCTGCT
CTGCCCCATCGCCGTCCACACCCAGCTTCCAACCACCCCAGCTCTCTCCCTGGGATGGCTCATT
TGGCCACTTCTCCCCCAGCCAGACTTACGAAGGCCTGCGGGCATGGACAGAGCAGCTGCCCAAG
GCTTCTGGGCCCCCGCAACCACCGACCTTCTTCTCTTTCAGTCCTCCCCCTGGTCCTAGCCCCA
GTCTGGCCCAAAGCTCCCTGAAGTTACTCCCCTCACAGGCTGCCCACCAGCTGGGGGAGGGAGA
GAGCTATTCCATGCCGGTGACTTTCCCAAGCCTGGCGCCCACTTCCCCACACCTGGACGGCCCA
GGGATGCTGGATGTGCCTGTGACCTCAGCCAAGGCCCGGAGCGGGGCTCCAGGTGGAAATGAGG
GCCGCTGTGCTGTGTGTGGGGACAATGCTTCATGTCAGCATTATGGTGTACGCACCTGCGAAGG
CTGCAAGGGCTTCTTTAAGCGCACAGTGCAGAAAAGCGCCAAGTACATCTGCCTGGCAAACAAG
GACTGCCCTGTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGCCGCTTCCAGAAGTGCCTGG
CTGTGGGCATGGTGAAGGAAGTTGTCCGAACAGACAGCCTGAAGGGGCGGCGGGGCCGGCTACC
TTCAAAACCCAAGCAGCCTCCAGATGCCTCCCCTGCCAATCTCCTCACCTCCCTTGTCCGAGCA
CACCTGGACTCGGGGCCCAGCACAGCGAAACTGGACTACTCCAAGTTCCAGGAGCTGGTGCTGC
CCCACTTTGGGAAGGAAGACGCTGGTGATGTGCAGCAGTTCTACGATCTTCTATCGGGTTCCCT
GGAGGTTATCCGCAAGTGGGCCGAGAAGATCCCTGGCTTTACTGAACTGTCTCCGGGTGACCAG
GACCTGCTACTGGAGTCAGCCTTCTTGGAGCTCTTCATCCTCCGCCTGGCCTACCGGTCTAAGC
CAGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTGCACCGACTCCAGTGTGCCCGCGG
CTTTGGTGACTGGATTGACAGTATCCTGGCATTCTCACGGTCCCTACATAGCTTGGTAGTCGAT
GTCCCTGCCTTTGCTTGCCTTTCTGCTCTTGTCCTCATCACTGACCGGCATGGGCTACAGGAGC
CACGGCGGGTGGAGGAGCTGCAGAACCGCATTGCCAGCTGCCTGAAAGAGCACATGGCAGCCAT
AGCCGGTGAGCCCCAGCCAGCCAGCTGCCTGTCACGTCTGCTGGGCAAATTGCCCGAGTTGCGA
ACCCTGTGCACCCAGGGCCTACAGCGCATCTTCTACCTCAAGCTGGAGGACTTGGTGCCTCCTC
CACCCATTGTTGACAAGATTTTTATGGACACACTGCCCTTCTGATTCCAACCCTGAACACGTGT
GCACATGCGTGCTCTTATGCCACCCCACGTGCCTTTAGCCCACGGACCCCCTGAGCACCTCCAT
AGCCTGGGCTTGAAGCTGCAGACTGACCACCTCCTCACCTGCTCCAGGAGGTCAGCAGAGAGCT
CAAGCCCTGTGGGAGGGGGATGCATTCATGGGGGTGACCCCAAAGTCTTATTCCCCAAGCCCAA
CCCTGGCCTTCATGTTTTTTGTAAGATAAACCGTTTTTATGCCTCTGTGCTGTAAATAAGCTGA
ATGCTGCTGTAAATACAGGAAGGAAGAGGTTAAGATGGAGGTTGGGGGGAAGGGATGGGGCCCC
CTCTGTCTGGGCAAGCCTTTCCAACCTCCTTCGACTTGCCCTCTCTTCCCACCCTCCTTCCACA
TGTACATAAACCGTCACTTGAGGAAGAAGACAAATGACAGATTCTGACATTTATATTTGTGTAT
TTTTCCTGGATTTATAGTATGTGACTTTTCTGATTAATATATTTAATATATTGAATAAAAAATA
GACATGTAGCTGAAATTGA

hide sequence

RefSeq Acc Id:

XM_013358495 ⟹ XP_013213949

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI
SpeTri2.0	NW_004936512	9,489,500 - 9,508,338 (+)	NCBI

Sequence:

show sequence

ATGGAACCCAGGGCCTCATGCATGCCATGCAGAAGCACTCTGCCACTAAGCCCAAGAGATTATG
TAATTCTCCTCGGGCAGCAAGTGGAGAGCCAAGATTCGAACCCAGTCTGGGATATAGCATCTGG
ATTCTTTGTTTTTTGGGGCCTCTACCATGGACAGAGGCTGGCCCCAGCCCTTCCCTGGTAGCCT
GGCTCCTTCTACCAGGCCCTGAAGGCCAAGGAGATGGTGTGAGTGCTACTTGTCCATCCAGAAT
GGATCTCTGAGGGTCGAAGCAGATCCAGAAGAGAAAAACGGAGTAATGCCCTGTATCCAAGCCC
AATATGGGACACCAGCACCAAGCCCAGGACCCCGTGACCACCTGGCAAGCGACGCCCTGACCCC
TGAACTCAGCAAGCCCACCATGGACCTGGCCAGCCCTGAGGCGGCCCCTGCTGCCCCCACTGCC
CTGCCCAGCTTCAGCACCTTCATGGATGGCTACACGGGAGAGTTTGATACCTTCCTCTACCAGC
TGCCCGGGACAGCCCAGCCATGCTCCTCGGCTTCCTCCTCCGCCTCCTCCACATCCTCCTCCTC
GGCCACCTCCCCTGCCTCTGCTTCCTTCAAATTTGAAGACTTCCAGGTGTACGGCTGCTACCCT
GGCACCCTGAGTGGTCCACTAGATGAGACCTTATCCTCCAGTGGCTCTGACTACTATGGCAGCC
CCTGCTCTGCCCCATCGCCGTCCACACCCAGCTTCCAACCACCCCAGCTCTCTCCCTGGGATGG
CTCATTTGGCCACTTCTCCCCCAGCCAGACTTACGAAGGCCTGCGGGCATGGACAGAGCAGCTG
CCCAAGGCTTCTGGGCCCCCGCAACCACCGACCTTCTTCTCTTTCAGTCCTCCCCCTGGTCCTA
GCCCCAGTCTGGCCCAAAGCTCCCTGAAGTTACTCCCCTCACAGGCTGCCCACCAGCTGGGGGA
GGGAGAGAGCTATTCCATGCCGGTGACTTTCCCAAGCCTGGCGCCCACTTCCCCACACCTGGAC
GGCCCAGGGATGCTGGATGTGCCTGTGACCTCAGCCAAGGCCCGGAGCGGGGCTCCAGGTGGAA
ATGAGGGCCGCTGTGCTGTGTGTGGGGACAATGCTTCATGTCAGCATTATGGTGTACGCACCTG
CGAAGGCTGCAAGGGCTTCTTTAAGCGCACAGTGCAGAAAAGCGCCAAGTACATCTGCCTGGCA
AACAAGGACTGCCCTGTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGCCGCTTCCAGAAGT
GCCTGGCTGTGGGCATGGTGAAGGAAGTTGTCCGAACAGACAGCCTGAAGGGGCGGCGGGGCCG
GCTACCTTCAAAACCCAAGCAGCCTCCAGATGCCTCCCCTGCCAATCTCCTCACCTCCCTTGTC
CGAGCACACCTGGACTCGGGGCCCAGCACAGCGAAACTGGACTACTCCAAGTTCCAGGAGCTGG
TGCTGCCCCACTTTGGGAAGGAAGACGCTGGTGATGTGCAGCAGTTCTACGATCTTCTATCGGG
TTCCCTGGAGGTTATCCGCAAGTGGGCCGAGAAGATCCCTGGCTTTACTGAACTGTCTCCGGGT
GACCAGGACCTGCTACTGGAGTCAGCCTTCTTGGAGCTCTTCATCCTCCGCCTGGCCTACCGGT
CTAAGCCAGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTGCACCGACTCCAGTGTGC
CCGCGGCTTTGGTGACTGGATTGACAGTATCCTGGCATTCTCACGGTCCCTACATAGCTTGGTA
GTCGATGTCCCTGCCTTTGCTTGCCTTTCTGCTCTTGTCCTCATCACTGACCGGCATGGGCTAC
AGGAGCCACGGCGGGTGGAGGAGCTGCAGAACCGCATTGCCAGCTGCCTGAAAGAGCACATGGC
AGCCATAGCCGGTGAGCCCCAGCCAGCCAGCTGCCTGTCACGTCTGCTGGGCAAATTGCCCGAG
TTGCGAACCCTGTGCACCCAGGGCCTACAGCGCATCTTCTACCTCAAGCTGGAGGACTTGGTGC
CTCCTCCACCCATTGTTGACAAGATTTTTATGGACACACTGCCCTTCTGATTCCAACCCTGAAC
ACGTGTGCACATGCGTGCTCTTATGCCACCCCACGTGCCTTTAGCCCACGGACCCCCTGAGCAC
CTCCATAGCCTGGGCTTGAAGCTGCAGACTGACCACCTCCTCACCTGCTCCAGGAGGTCAGCAG
AGAGCTCAAGCCCTGTGGGAGGGGGATGCATTCATGGGGGTGACCCCAAAGTCTTATTCCCCAA
GCCCAACCCTGGCCTTCATGTTTTTTGTAAGATAAACCGTTTTTATGCCTCTGTGCTGTAAATA
AGCTGAATGCTGCTGTAAATACAGGAAGGAAGAGGTTAAGATGGAGGTTGGGGGGAAGGGATGG
GGCCCCCTCTGTCTGGGCAAGCCTTTCCAACCTCCTTCGACTTGCCCTCTCTTCCCACCCTCCT
TCCACATGTACATAAACCGTCACTTGAGGAAGAAGACAAATGACAGATTCTGACATTTATATTT
GTGTATTTTTCCTGGATTTATAGTATGTGACTTTTCTGATTAATATATTTAATATATTGAATAA
AAAATAGACATGTAGCTGAAATTGA

hide sequence

RefSeq Acc Id:

XM_021726180 ⟹ XP_021581855

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI
SpeTri2.0	NW_004936512	9,486,096 - 9,508,338 (+)	NCBI

Sequence:

show sequence

CCCAGGGCGGGCTCGGAGCCACGCCGGGAGTCCTGCTTGGAAACTGGGGAGCGAGGGAGCGGGG
CTGGATTCCCAGCGGGACCTGCTGGCTGCGAGTCAGCCCCGAGCGCGACGGCCAGCGCTTTCGC
TCCGCAGCCCGCCAAGGGTGGGGTTTGGCCCGCGAGGGGCGCTGGAAGTGGCCAGGCCAGAGAA
ATTCCTTCCATTTCCCCGCCGGCTGCGGGGAACGGGTTCCAGGAGCTCGGGATCCCCGCTGCCA
GCAGACCCAGCCCGGAGGGACTGACCGGCAGTGTGCAGTGCAACCCCTTCGGGGGTCTGAGGGG
AGCATCCGAACCCAGGGAGGGTCCCAGGCACTCAGGCGCGCCATTGGGGTTTGGCCTCGGTCCG
TGTCCCCCAGGCGTGTATTCTGCCGCAACCCATTGTCTCCTGACTGTGGCTTTACTGGGGAGAG
CGGCACTTCCAGAGTATGGTCCTTATTGAGGGCAGGGTGCAACTCCTTCCTTAACTTGGGCACG
TTCGGTTTTTATGCCTGGTTTTCATAGATTTCTAGGTGGACGGAGGAGGAAGGCTGCAGAGGTG
ATTTGAGTGATTTTGAATTTGAGTTGGGGCTAGTATTATAGGCATGTTGGGCAAACGCAGGCCA
GGCTATCTATGGTAGATAGATGCTAAACAAGTATACCCAAAGGGTGTGGATGGGCCTGGACTGA
GGCTCTGCGGGGCCCCAAGGCTTGATACTAGATCTACTCCAAGTGAACATGTAGATTAGTGACT
GGGATACTACTTAAAAAGGAAGCCAGTTGACTCTAGTGACCCAGAGATGGGAGGAATGACAACT
GTACAGTTCGATAAAATCAAGACTCTAGACGATGATGTCTGGGCAGAACGATGGGCCAAGACCA
ACAAGATGAATGTGACTGATGAGAATTGTTGAGGCCAGTACTGGAGGCCTCTACCATGGACAGA
GGCTGGCCCCAGCCCTTCCCTGGTAGCCTGGCTCCTTCTACCAGGCCCTGAAGGCCAAGGAGAT
GGTGTGAGTGCTACTTGTCCATCCAGAATGGCCTCCCTGTGGCTGCCCGCAGAGTCCCCTCCAT
CCCTGGATTCTTCCTCTGTCGTTCAGGATCTCTGAGGGTCGAAGCAGATCCAGAAGAGAAAAAC
GGAGATTGTCCCCAGGGACTCAACTGTCTTCTTCAGTCCACCTGGCCTGGTTGAGGCACCAGTC
TGCTCAGGCAGGAGAGAGAGGCTGGAAGTAATGCCCTGTATCCAAGCCCAATATGGGACACCAG
CACCAAGCCCAGGACCCCGTGACCACCTGGCAAGCGACGCCCTGACCCCTGAACTCAGCAAGCC
CACCATGGACCTGGCCAGCCCTGAGGCGGCCCCTGCTGCCCCCACTGCCCTGCCCAGCTTCAGC
ACCTTCATGGATGGCTACACGGGAGAGTTTGATACCTTCCTCTACCAGCTGCCCGGGACAGCCC
AGCCATGCTCCTCGGCTTCCTCCTCCGCCTCCTCCACATCCTCCTCCTCGGCCACCTCCCCTGC
CTCTGCTTCCTTCAAATTTGAAGACTTCCAGGTGTACGGCTGCTACCCTGGCACCCTGAGTGGT
CCACTAGATGAGACCTTATCCTCCAGTGGCTCTGACTACTATGGCAGCCCCTGCTCTGCCCCAT
CGCCGTCCACACCCAGCTTCCAACCACCCCAGCTCTCTCCCTGGGATGGCTCATTTGGCCACTT
CTCCCCCAGCCAGACTTACGAAGGCCTGCGGGCATGGACAGAGCAGCTGCCCAAGGCTTCTGGG
CCCCCGCAACCACCGACCTTCTTCTCTTTCAGTCCTCCCCCTGGTCCTAGCCCCAGTCTGGCCC
AAAGCTCCCTGAAGTTACTCCCCTCACAGGCTGCCCACCAGCTGGGGGAGGGAGAGAGCTATTC
CATGCCGGTGACTTTCCCAAGCCTGGCGCCCACTTCCCCACACCTGGACGGCCCAGGGATGCTG
GATGTGCCTGTGACCTCAGCCAAGGCCCGGAGCGGGGCTCCAGGTGGAAATGAGGGCCGCTGTG
CTGTGTGTGGGGACAATGCTTCATGTCAGCATTATGGTGTACGCACCTGCGAAGGCTGCAAGGG
CTTCTTTAAGCGCACAGTGCAGAAAAGCGCCAAGTACATCTGCCTGGCAAACAAGGACTGCCCT
GTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGCCGCTTCCAGAAGTGCCTGGCTGTGGGCA
TGGTGAAGGAAGTTGTCCGAACAGACAGCCTGAAGGGGCGGCGGGGCCGGCTACCTTCAAAACC
CAAGCAGCCTCCAGATGCCTCCCCTGCCAATCTCCTCACCTCCCTTGTCCGAGCACACCTGGAC
TCGGGGCCCAGCACAGCGAAACTGGACTACTCCAAGTTCCAGGAGCTGGTGCTGCCCCACTTTG
GGAAGGAAGACGCTGGTGATGTGCAGCAGTTCTACGATCTTCTATCGGGTTCCCTGGAGGTTAT
CCGCAAGTGGGCCGAGAAGATCCCTGGCTTTACTGAACTGTCTCCGGGTGACCAGGACCTGCTA
CTGGAGTCAGCCTTCTTGGAGCTCTTCATCCTCCGCCTGGCCTACCGGTCTAAGCCAGGTGAGG
GGAAGCTCATCTTCTGCTCAGGCCTGGTGCTGCACCGACTCCAGTGTGCCCGCGGCTTTGGTGA
CTGGATTGACAGTATCCTGGCATTCTCACGGTCCCTACATAGCTTGGTAGTCGATGTCCCTGCC
TTTGCTTGCCTTTCTGCTCTTGTCCTCATCACTGACCGGCATGGGCTACAGGAGCCACGGCGGG
TGGAGGAGCTGCAGAACCGCATTGCCAGCTGCCTGAAAGAGCACATGGCAGCCATAGCCGGTGA
GCCCCAGCCAGCCAGCTGCCTGTCACGTCTGCTGGGCAAATTGCCCGAGTTGCGAACCCTGTGC
ACCCAGGGCCTACAGCGCATCTTCTACCTCAAGCTGGAGGACTTGGTGCCTCCTCCACCCATTG
TTGACAAGATTTTTATGGACACACTGCCCTTCTGATTCCAACCCTGAACACGTGTGCACATGCG
TGCTCTTATGCCACCCCACGTGCCTTTAGCCCACGGACCCCCTGAGCACCTCCATAGCCTGGGC
TTGAAGCTGCAGACTGACCACCTCCTCACCTGCTCCAGGAGGTCAGCAGAGAGCTCAAGCCCTG
TGGGAGGGGGATGCATTCATGGGGGTGACCCCAAAGTCTTATTCCCCAAGCCCAACCCTGGCCT
TCATGTTTTTTGTAAGATAAACCGTTTTTATGCCTCTGTGCTGTAAATAAGCTGAATGCTGCTG
TAAATACAGGAAGGAAGAGGTTAAGATGGAGGTTGGGGGGAAGGGATGGGGCCCCCTCTGTCTG
GGCAAGCCTTTCCAACCTCCTTCGACTTGCCCTCTCTTCCCACCCTCCTTCCACATGTACATAA
ACCGTCACTTGAGGAAGAAGACAAATGACAGATTCTGACATTTATATTTGTGTATTTTTCCTGG
ATTTATAGTATGTGACTTTTCTGATTAATATATTTAATATATTGAATAAAAAATAGACATGTAG
CTGAAATTGA

hide sequence

RefSeq Acc Id:

XM_021726181 ⟹ XP_021581856

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,739 (-)	NCBI
SpeTri2.0	NW_004936512	9,489,500 - 9,508,338 (+)	NCBI

Sequence:

show sequence

ATGGAACCCAGGGCCTCATGCATGCCATGCAGAAGCACTCTGCCACTAAGCCCAAGAGATTATG
TAATTCTCCTCGGGCAGCAAGTGGAGAGCCAAGATTCGAACCCAGTCTGGGATATAGCATCTGG
ATTCTTTGTTTTTTGGGGCCTCTACCATGGACAGAGGCTGGCCCCAGCCCTTCCCTGGTAGCCT
GGCTCCTTCTACCAGGCCCTGAAGGCCAAGGAGATGGTGTGAGTGCTACTTGTCCATCCAGAAT
GGCCTCCCTGTGGCTGCCCGCAGAGTCCCCTCCATCCCTGGATTCTTCCTCTGTCGTTCAGGAT
CTCTGAGGGTCGAAGCAGATCCAGAAGAGAAAAACGGAGTAATGCCCTGTATCCAAGCCCAATA
TGGGACACCAGCACCAAGCCCAGGACCCCGTGACCACCTGGCAAGCGACGCCCTGACCCCTGAA
CTCAGCAAGCCCACCATGGACCTGGCCAGCCCTGAGGCGGCCCCTGCTGCCCCCACTGCCCTGC
CCAGCTTCAGCACCTTCATGGATGGCTACACGGGAGAGTTTGATACCTTCCTCTACCAGCTGCC
CGGGACAGCCCAGCCATGCTCCTCGGCTTCCTCCTCCGCCTCCTCCACATCCTCCTCCTCGGCC
ACCTCCCCTGCCTCTGCTTCCTTCAAATTTGAAGACTTCCAGGTGTACGGCTGCTACCCTGGCA
CCCTGAGTGGTCCACTAGATGAGACCTTATCCTCCAGTGGCTCTGACTACTATGGCAGCCCCTG
CTCTGCCCCATCGCCGTCCACACCCAGCTTCCAACCACCCCAGCTCTCTCCCTGGGATGGCTCA
TTTGGCCACTTCTCCCCCAGCCAGACTTACGAAGGCCTGCGGGCATGGACAGAGCAGCTGCCCA
AGGCTTCTGGGCCCCCGCAACCACCGACCTTCTTCTCTTTCAGTCCTCCCCCTGGTCCTAGCCC
CAGTCTGGCCCAAAGCTCCCTGAAGTTACTCCCCTCACAGGCTGCCCACCAGCTGGGGGAGGGA
GAGAGCTATTCCATGCCGGTGACTTTCCCAAGCCTGGCGCCCACTTCCCCACACCTGGACGGCC
CAGGGATGCTGGATGTGCCTGTGACCTCAGCCAAGGCCCGGAGCGGGGCTCCAGGTGGAAATGA
GGGCCGCTGTGCTGTGTGTGGGGACAATGCTTCATGTCAGCATTATGGTGTACGCACCTGCGAA
GGCTGCAAGGGCTTCTTTAAGCGCACAGTGCAGAAAAGCGCCAAGTACATCTGCCTGGCAAACA
AGGACTGCCCTGTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGCCGCTTCCAGAAGTGCCT
GGCTGTGGGCATGGTGAAGGAAGTTGTCCGAACAGACAGCCTGAAGGGGCGGCGGGGCCGGCTA
CCTTCAAAACCCAAGCAGCCTCCAGATGCCTCCCCTGCCAATCTCCTCACCTCCCTTGTCCGAG
CACACCTGGACTCGGGGCCCAGCACAGCGAAACTGGACTACTCCAAGTTCCAGGAGCTGGTGCT
GCCCCACTTTGGGAAGGAAGACGCTGGTGATGTGCAGCAGTTCTACGATCTTCTATCGGGTTCC
CTGGAGGTTATCCGCAAGTGGGCCGAGAAGATCCCTGGCTTTACTGAACTGTCTCCGGGTGACC
AGGACCTGCTACTGGAGTCAGCCTTCTTGGAGCTCTTCATCCTCCGCCTGGCCTACCGGTCTAA
GCCAGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTGCACCGACTCCAGTGTGCCCGC
GGCTTTGGTGACTGGATTGACAGTATCCTGGCATTCTCACGGTCCCTACATAGCTTGGTAGTCG
ATGTCCCTGCCTTTGCTTGCCTTTCTGCTCTTGTCCTCATCACTGACCGGCATGGGCTACAGGA
GCCACGGCGGGTGGAGGAGCTGCAGAACCGCATTGCCAGCTGCCTGAAAGAGCACATGGCAGCC
ATAGCCGGTGAGCCCCAGCCAGCCAGCTGCCTGTCACGTCTGCTGGGCAAATTGCCCGAGTTGC
GAACCCTGTGCACCCAGGGCCTACAGCGCATCTTCTACCTCAAGCTGGAGGACTTGGTGCCTCC
TCCACCCATTGTTGACAAGATTTTTATGGACACACTGCCCTTCTGATTCCAACCCTGAACACGT
GTGCACATGCGTGCTCTTATGCCACCCCACGTGCCTTTAGCCCACGGACCCCCTGAGCACCTCC
ATAGCCTGGGCTTGAAGCTGCAGACTGACCACCTCCTCACCTGCTCCAGGAGGTCAGCAGAGAG
CTCAAGCCCTGTGGGAGGGGGATGCATTCATGGGGGTGACCCCAAAGTCTTATTCCCCAAGCCC
AACCCTGGCCTTCATGTTTTTTGTAAGATAAACCGTTTTTATGCCTCTGTGCTGTAAATAAGCT
GAATGCTGCTGTAAATACAGGAAGGAAGAGGTTAAGATGGAGGTTGGGGGGAAGGGATGGGGCC
CCCTCTGTCTGGGCAAGCCTTTCCAACCTCCTTCGACTTGCCCTCTCTTCCCACCCTCCTTCCA
CATGTACATAAACCGTCACTTGAGGAAGAAGACAAATGACAGATTCTGACATTTATATTTGTGT
ATTTTTCCTGGATTTATAGTATGTGACTTTTCTGATTAATATATTTAATATATTGAATAAAAAA
TAGACATGTAGCTGAAATTGA

hide sequence

RefSeq Acc Id:

XM_021726182 ⟹ XP_021581857

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI
SpeTri2.0	NW_004936512	9,489,500 - 9,508,338 (+)	NCBI

Sequence:

show sequence

ATGGAACCCAGGGCCTCATGCATGCCATGCAGAAGCACTCTGCCACTAAGCCCAAGAGATTATG
TAATTCTCCTCGGGCAGCAAGTGGAGAGCCAAGATTCGAACCCAGTCTGGGATATAGCATCTGG
ATTCTTTGTTTTTTGGGGCCTCTACCATGGACAGAGGCTGGCCCCAGCCCTTCCCTGGTAGCCT
GGCTCCTTCTACCAGGCCCTGAAGGCCAAGGAGATGGTGTGAGTGCTACTTGTCCATCCAGAAT
GGATCTCTGAGGGTCGAAGCAGATCCAGAAGAGAAAAACGGAGATTGTCCCCAGGGACTCAACT
GTCTTCTTCAGTCCACCTGGCCTGGTTGAGGCACCAGTCTGCTCAGGCAGGAGAGAGAGGCTGG
AAGTAATGCCCTGTATCCAAGCCCAATATGGGACACCAGCACCAAGCCCAGGACCCCGTGACCA
CCTGGCAAGCGACGCCCTGACCCCTGAACTCAGCAAGCCCACCATGGACCTGGCCAGCCCTGAG
GCGGCCCCTGCTGCCCCCACTGCCCTGCCCAGCTTCAGCACCTTCATGGATGGCTACACGGGAG
AGTTTGATACCTTCCTCTACCAGCTGCCCGGGACAGCCCAGCCATGCTCCTCGGCTTCCTCCTC
CGCCTCCTCCACATCCTCCTCCTCGGCCACCTCCCCTGCCTCTGCTTCCTTCAAATTTGAAGAC
TTCCAGGTGTACGGCTGCTACCCTGGCACCCTGAGTGGTCCACTAGATGAGACCTTATCCTCCA
GTGGCTCTGACTACTATGGCAGCCCCTGCTCTGCCCCATCGCCGTCCACACCCAGCTTCCAACC
ACCCCAGCTCTCTCCCTGGGATGGCTCATTTGGCCACTTCTCCCCCAGCCAGACTTACGAAGGC
CTGCGGGCATGGACAGAGCAGCTGCCCAAGGCTTCTGGGCCCCCGCAACCACCGACCTTCTTCT
CTTTCAGTCCTCCCCCTGGTCCTAGCCCCAGTCTGGCCCAAAGCTCCCTGAAGTTACTCCCCTC
ACAGGCTGCCCACCAGCTGGGGGAGGGAGAGAGCTATTCCATGCCGGTGACTTTCCCAAGCCTG
GCGCCCACTTCCCCACACCTGGACGGCCCAGGGATGCTGGATGTGCCTGTGACCTCAGCCAAGG
CCCGGAGCGGGGCTCCAGGTGGAAATGAGGGCCGCTGTGCTGTGTGTGGGGACAATGCTTCATG
TCAGCATTATGGTGTACGCACCTGCGAAGGCTGCAAGGGCTTCTTTAAGCGCACAGTGCAGAAA
AGCGCCAAGTACATCTGCCTGGCAAACAAGGACTGCCCTGTGGACAAGAGGCGGCGGAACCGCT
GCCAGTTCTGCCGCTTCCAGAAGTGCCTGGCTGTGGGCATGGTGAAGGAAGTTGTCCGAACAGA
CAGCCTGAAGGGGCGGCGGGGCCGGCTACCTTCAAAACCCAAGCAGCCTCCAGATGCCTCCCCT
GCCAATCTCCTCACCTCCCTTGTCCGAGCACACCTGGACTCGGGGCCCAGCACAGCGAAACTGG
ACTACTCCAAGTTCCAGGAGCTGGTGCTGCCCCACTTTGGGAAGGAAGACGCTGGTGATGTGCA
GCAGTTCTACGATCTTCTATCGGGTTCCCTGGAGGTTATCCGCAAGTGGGCCGAGAAGATCCCT
GGCTTTACTGAACTGTCTCCGGGTGACCAGGACCTGCTACTGGAGTCAGCCTTCTTGGAGCTCT
TCATCCTCCGCCTGGCCTACCGGTCTAAGCCAGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCT
GGTGCTGCACCGACTCCAGTGTGCCCGCGGCTTTGGTGACTGGATTGACAGTATCCTGGCATTC
TCACGGTCCCTACATAGCTTGGTAGTCGATGTCCCTGCCTTTGCTTGCCTTTCTGCTCTTGTCC
TCATCACTGACCGGCATGGGCTACAGGAGCCACGGCGGGTGGAGGAGCTGCAGAACCGCATTGC
CAGCTGCCTGAAAGAGCACATGGCAGCCATAGCCGGTGAGCCCCAGCCAGCCAGCTGCCTGTCA
CGTCTGCTGGGCAAATTGCCCGAGTTGCGAACCCTGTGCACCCAGGGCCTACAGCGCATCTTCT
ACCTCAAGCTGGAGGACTTGGTGCCTCCTCCACCCATTGTTGACAAGATTTTTATGGACACACT
GCCCTTCTGATTCCAACCCTGAACACGTGTGCACATGCGTGCTCTTATGCCACCCCACGTGCCT
TTAGCCCACGGACCCCCTGAGCACCTCCATAGCCTGGGCTTGAAGCTGCAGACTGACCACCTCC
TCACCTGCTCCAGGAGGTCAGCAGAGAGCTCAAGCCCTGTGGGAGGGGGATGCATTCATGGGGG
TGACCCCAAAGTCTTATTCCCCAAGCCCAACCCTGGCCTTCATGTTTTTTGTAAGATAAACCGT
TTTTATGCCTCTGTGCTGTAAATAAGCTGAATGCTGCTGTAAATACAGGAAGGAAGAGGTTAAG
ATGGAGGTTGGGGGGAAGGGATGGGGCCCCCTCTGTCTGGGCAAGCCTTTCCAACCTCCTTCGA
CTTGCCCTCTCTTCCCACCCTCCTTCCACATGTACATAAACCGTCACTTGAGGAAGAAGACAAA
TGACAGATTCTGACATTTATATTTGTGTATTTTTCCTGGATTTATAGTATGTGACTTTTCTGAT
TAATATATTTAATATATTGAATAAAAAATAGACATGTAGCTGAAATTGA

hide sequence

RefSeq Acc Id:

XM_040280616 ⟹ XP_040136550

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI

RefSeq Acc Id:

XM_040280617 ⟹ XP_040136551

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	63,656,496 - 63,678,740 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005325037	(Get FASTA)	NCBI Sequence Viewer
	XP_013213949	(Get FASTA)	NCBI Sequence Viewer
	XP_021581855	(Get FASTA)	NCBI Sequence Viewer
	XP_021581856	(Get FASTA)	NCBI Sequence Viewer
	XP_021581857	(Get FASTA)	NCBI Sequence Viewer
	XP_040136550	(Get FASTA)	NCBI Sequence Viewer
	XP_040136551	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015534.2
GenBank Protein	KAG3291920	(Get FASTA)	NCBI Sequence Viewer
	KAG3291921	(Get FASTA)	NCBI Sequence Viewer
	KAG3291922	(Get FASTA)	NCBI Sequence Viewer
	KAG3291923	(Get FASTA)	NCBI Sequence Viewer
	KAG3291924	(Get FASTA)	NCBI Sequence Viewer
	KAG3291925	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013213949 ⟸ XM_013358495

- UniProtKB:

I3MTT9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPCIQAQYGTPAPSPGPRDHLASDALTPELSKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEF
DTFLYQLPGTAQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGTLSGPLDETLSSSG
SDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPTFFSF
SPPPGPSPSLAQSSLKLLPSQAAHQLGEGESYSMPVTFPSLAPTSPHLDGPGMLDVPVTSAKAR
SGAPGGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQ
FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDY
SKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFTELSPGDQDLLLESAFLELFI
LRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLVVDVPAFACLSALVLI
TDRHGLQEPRRVEELQNRIASCLKEHMAAIAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYL
KLEDLVPPPPIVDKIFMDTLPF

hide sequence

RefSeq Acc Id:

XP_005325037 ⟸ XM_005324980

- UniProtKB:

I3MTT9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPCIQAQYGTPAPSPGPRDHLASDALTPELSKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEF
DTFLYQLPGTAQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGTLSGPLDETLSSSG
SDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPTFFSF
SPPPGPSPSLAQSSLKLLPSQAAHQLGEGESYSMPVTFPSLAPTSPHLDGPGMLDVPVTSAKAR
SGAPGGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQ
FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDY
SKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFTELSPGDQDLLLESAFLELFI
LRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLVVDVPAFACLSALVLI
TDRHGLQEPRRVEELQNRIASCLKEHMAAIAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYL
KLEDLVPPPPIVDKIFMDTLPF

hide sequence

RefSeq Acc Id:

XP_021581855 ⟸ XM_021726180

- UniProtKB:

I3MTT9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPCIQAQYGTPAPSPGPRDHLASDALTPELSKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEF
DTFLYQLPGTAQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGTLSGPLDETLSSSG
SDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPTFFSF
SPPPGPSPSLAQSSLKLLPSQAAHQLGEGESYSMPVTFPSLAPTSPHLDGPGMLDVPVTSAKAR
SGAPGGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQ
FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDY
SKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFTELSPGDQDLLLESAFLELFI
LRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLVVDVPAFACLSALVLI
TDRHGLQEPRRVEELQNRIASCLKEHMAAIAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYL
KLEDLVPPPPIVDKIFMDTLPF

hide sequence

RefSeq Acc Id:

XP_021581856 ⟸ XM_021726181

- UniProtKB:

I3MTT9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPCIQAQYGTPAPSPGPRDHLASDALTPELSKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEF
DTFLYQLPGTAQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGTLSGPLDETLSSSG
SDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPTFFSF
SPPPGPSPSLAQSSLKLLPSQAAHQLGEGESYSMPVTFPSLAPTSPHLDGPGMLDVPVTSAKAR
SGAPGGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQ
FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDY
SKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFTELSPGDQDLLLESAFLELFI
LRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLVVDVPAFACLSALVLI
TDRHGLQEPRRVEELQNRIASCLKEHMAAIAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYL
KLEDLVPPPPIVDKIFMDTLPF

hide sequence

RefSeq Acc Id:

XP_021581857 ⟸ XM_021726182

- UniProtKB:

I3MTT9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPCIQAQYGTPAPSPGPRDHLASDALTPELSKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEF
DTFLYQLPGTAQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGTLSGPLDETLSSSG
SDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPTFFSF
SPPPGPSPSLAQSSLKLLPSQAAHQLGEGESYSMPVTFPSLAPTSPHLDGPGMLDVPVTSAKAR
SGAPGGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQ
FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDY
SKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFTELSPGDQDLLLESAFLELFI
LRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLVVDVPAFACLSALVLI
TDRHGLQEPRRVEELQNRIASCLKEHMAAIAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYL
KLEDLVPPPPIVDKIFMDTLPF

hide sequence

RefSeq Acc Id:	XP_040136550 ⟸ XM_040280616
- UniProtKB:	I3MTT9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040136551 ⟸ XM_040280617
- UniProtKB:	I3MTT9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000015534 ⟸ ENSSTOT00000026154

Protein Domains

NR LBD Nuclear receptor

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000019650	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000026154.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	NHR-like_dom_sf	UniProtKB/TrEMBL
	Nuc_orp_HMR_rcpt	UniProtKB/TrEMBL
	Nuc_orph_rcpt	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/TrEMBL
	Nuclear_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
NCBI Gene	Nr4a1	ENTREZGENE
PANTHER	NUCLEAR HORMONE RECEPTOR	UniProtKB/TrEMBL
	NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PRINTS	HMRNUCRECPTR	UniProtKB/TrEMBL
	NUCLEARECPTR	UniProtKB/TrEMBL
	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF48508	UniProtKB/TrEMBL
UniProt	I3MTT9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD