Trpv3 (transient receptor potential cation channel subfamily V member 3) - Rat Genome Database

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Gene: Trpv3 (transient receptor potential cation channel subfamily V member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Trpv3
Name: transient receptor potential cation channel subfamily V member 3
RGD ID: 12675866
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of calcium ion import (ortholog); response to temperature stimulus (ortholog); ASSOCIATED WITH alopecia (ortholog); atopic dermatitis (ortholog); autosomal dominant mutilating palmoplantar keratoderma with periorificial keratotic plaques (ortholog); FOUND IN cilium (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transient receptor potential cation channel subfamily V member 3, transcript variant X1; transient receptor potential cation channel subfamily V member 3, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,630,463 - 55,663,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677239,435 - 270,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677239,133 - 270,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trpv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,630,463 - 55,663,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677239,435 - 270,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677239,133 - 270,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,510,502 - 3,557,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,510,502 - 3,557,812 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,413,796 - 3,461,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,363,236 - 3,408,039 (-)NCBINCBI36Build 36hg18NCBI36
Build 34173,363,235 - 3,408,039NCBI
Celera173,430,192 - 3,475,028 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,305,340 - 3,352,994 (-)NCBIHuRef
CHM1_1173,424,206 - 3,472,113 (-)NCBICHM1_1
T2T-CHM13v2.0173,399,413 - 3,446,868 (-)NCBIT2T-CHM13v2.0
Trpv3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,158,315 - 73,191,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,158,214 - 73,191,189 (+)EnsemblGRCm39 Ensembl
GRCm381173,267,489 - 73,300,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,267,388 - 73,300,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,081,122 - 73,110,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,083,815 - 73,113,395 (+)NCBIMGSCv36mm8
Celera1180,804,879 - 80,834,418 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.25NCBI
Trpv3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,382,054 - 58,413,657 (+)NCBIGRCr8
mRatBN7.21057,883,546 - 57,915,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,883,546 - 57,913,296 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,539,748 - 62,569,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01062,028,216 - 62,057,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,527,346 - 57,557,111 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,829,755 - 59,863,780 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,831,241 - 59,860,987 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,570,474 - 59,600,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,126,243 - 60,171,718 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1057,006,489 - 57,036,234 (+)NCBICelera
Cytogenetic Map10q24NCBI
Trpv3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,248,599 - 13,276,718 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,246,099 - 13,276,741 (+)NCBIChiLan1.0ChiLan1.0
TRPV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,119,398 - 11,157,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,085,828 - 13,123,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,528,734 - 3,577,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,516,209 - 3,603,787 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,516,209 - 3,603,787 (-)Ensemblpanpan1.1panPan2
TRPV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,365,275 - 47,398,198 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,368,544 - 47,401,362 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,528,079 - 46,563,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,209,963 - 48,245,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,213,257 - 48,242,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,982,521 - 47,018,152 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,274,342 - 47,311,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,331,441 - 47,367,082 (-)NCBIUU_Cfam_GSD_1.0
TRPV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,635,927 - 49,671,613 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,638,852 - 49,671,671 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,498,820 - 51,529,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242154
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,975,771 - 3,062,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,019,602 - 3,059,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,770,240 - 18,816,909 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247866,194,638 - 6,221,887 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247866,191,463 - 6,224,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002015   ⟹   ENSSTOP00000001795
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936677239,435 - 270,512 (-)Ensembl
RefSeq Acc Id: XM_005337293   ⟹   XP_005337350
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560255,630,594 - 55,663,973 (+)NCBI
SpeTri2.0NW_004936677239,133 - 270,512 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005337295   ⟹   XP_005337352
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560255,630,463 - 55,663,973 (+)NCBI
SpeTri2.0NW_004936677239,133 - 270,512 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337350 (Get FASTA)   NCBI Sequence Viewer  
  XP_005337352 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001795.2
GenBank Protein KAG3270174 (Get FASTA)   NCBI Sequence Viewer  
  KAG3270175 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005337352   ⟸   XM_005337295
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005337350   ⟸   XM_005337293
- Peptide Label: isoform X1
- UniProtKB: I3LZM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000001795   ⟸   ENSSTOT00000002015
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002008 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002015.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRPV UniProtKB/TrEMBL
  TRPV1-4_channel UniProtKB/TrEMBL
NCBI Gene Trpv3 ENTREZGENE
PANTHER PTHR10582 UniProtKB/TrEMBL
  PTHR10582:SF6 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS TRPVRECEPTOR UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt I3LZM0 ENTREZGENE, UniProtKB/TrEMBL