Aadat (aminoadipate aminotransferase) - Rat Genome Database

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Gene: Aadat (aminoadipate aminotransferase) Ictidomys tridecemlineatus
Analyze
Symbol: Aadat
Name: aminoadipate aminotransferase
RGD ID: 12674541
Description: ENCODES a protein that exhibits kynurenine-oxoglutarate transaminase activity (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (inferred); biosynthetic process (inferred); glutamate metabolic process (inferred); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: aminoadipate aminotransferase, transcript variant X1; aminoadipate aminotransferase, transcript variant X2; kynurenine/alpha-aminoadipate aminotransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494321,612,298 - 21,637,776 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365162,029,715 - 2,052,041 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365162,030,032 - 2,052,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aadat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494321,612,298 - 21,637,776 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365162,029,715 - 2,052,041 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365162,030,032 - 2,052,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AADAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384170,060,222 - 170,094,292 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4170,060,222 - 170,091,699 (-)EnsemblGRCh38hg38GRCh38
GRCh374170,981,373 - 171,011,538 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364171,217,948 - 171,247,947 (-)NCBINCBI36Build 36hg18NCBI36
Celera4168,313,662 - 168,343,661 (-)NCBICelera
Cytogenetic Map4q33NCBI
HuRef4166,736,223 - 166,766,217 (-)NCBIHuRef
CHM1_14170,957,912 - 170,987,911 (-)NCBICHM1_1
T2T-CHM13v2.04173,420,406 - 173,454,472 (-)NCBIT2T-CHM13v2.0
Aadat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39860,958,877 - 60,998,711 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl860,958,966 - 60,998,711 (+)EnsemblGRCm39 Ensembl
GRCm38860,505,843 - 60,545,677 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl860,505,932 - 60,545,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv37862,984,921 - 63,024,474 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36863,398,266 - 63,437,819 (+)NCBIMGSCv36mm8
Celera863,093,543 - 63,132,626 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map830.85NCBI
Aadat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81634,520,236 - 34,566,388 (-)NCBIGRCr8
mRatBN7.21629,509,392 - 29,544,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1629,509,394 - 29,544,332 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1633,104,268 - 33,139,214 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01636,538,015 - 36,572,956 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01632,738,925 - 32,773,893 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01632,832,001 - 32,868,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1632,832,061 - 32,868,702 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01632,665,727 - 32,705,543 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41632,845,006 - 32,885,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11632,845,082 - 32,885,675 (-)NCBI
Celera1629,503,305 - 29,538,406 (-)NCBICelera
Cytogenetic Map16p12NCBI
AADAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23167,840,395 - 167,870,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14168,196,263 - 168,228,815 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04162,283,569 - 162,313,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14174,353,766 - 174,383,471 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4174,353,766 - 174,383,471 (-)Ensemblpanpan1.1panPan2
AADAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12520,920,118 - 20,944,251 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2520,920,139 - 20,945,387 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2521,552,316 - 21,578,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02521,095,996 - 21,122,120 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2521,095,909 - 21,122,348 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12520,979,787 - 21,005,336 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02520,916,219 - 20,941,386 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02521,013,862 - 21,039,554 (-)NCBIUU_Cfam_GSD_1.0
AADAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1419,768,776 - 19,792,256 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11419,768,816 - 19,792,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,067,885 - 21,091,280 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AADAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17116,268,241 - 116,299,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7116,268,253 - 116,298,336 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603796,208,477 - 96,238,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aadat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247691,581,727 - 1,610,793 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247691,586,036 - 1,611,092 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000022801   ⟹   ENSSTOP00000021589
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365162,029,715 - 2,052,041 (-)Ensembl
RefSeq Acc Id: XM_005325505   ⟹   XP_005325562
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494321,612,298 - 21,637,776 (-)NCBI
SpeTri2.0NW_0049365162,030,032 - 2,052,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726506   ⟹   XP_021582181
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494321,612,298 - 21,637,594 (-)NCBI
SpeTri2.0NW_0049365162,030,032 - 2,051,685 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325562 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582181 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021589.1
GenBank Protein KAG3294500 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294501 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325562   ⟸   XM_005325505
- Peptide Label: isoform X1
- UniProtKB: I3NB42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582181   ⟸   XM_021726506
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000021589   ⟸   ENSSTOT00000022801

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021624 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022801.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
InterPro Aminotransferase_I/II UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
NCBI Gene Aadat ENTREZGENE
PANTHER AMINOTRANSFERASE UniProtKB/TrEMBL
  KYNURENINE/ALPHA-AMINOADIPATE AMINOTRANSFERASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt I3NB42 ENTREZGENE, UniProtKB/TrEMBL