Trpm1 (transient receptor potential cation channel subfamily M member 1) - Rat Genome Database

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Gene: Trpm1 (transient receptor potential cation channel subfamily M member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Trpm1
Name: transient receptor potential cation channel subfamily M member 1
RGD ID: 12674151
Description: ENCODES a protein that exhibits monoatomic cation channel activity (ortholog); INVOLVED IN cellular response to light stimulus (ortholog); protein localization (ortholog); retinal rod cell development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 15q13.3 microdeletion syndrome (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); new growing cell tip (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transient receptor potential cation channel subfamily M member 1, transcript variant X1; transient receptor potential cation channel subfamily M member 1, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640145,477,644 - 145,610,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936483724,018 - 858,855 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936483723,784 - 856,839 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trpm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640145,477,644 - 145,610,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936483724,018 - 858,855 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936483723,784 - 856,839 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381531,001,065 - 31,161,160 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1531,001,065 - 31,161,160 (-)EnsemblGRCh38hg38GRCh38
GRCh371531,293,268 - 31,453,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361529,080,829 - 29,181,216 (-)NCBINCBI36Build 36hg18NCBI36
Build 341529,080,844 - 29,181,216NCBI
Celera159,019,006 - 9,119,394 (-)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef158,470,226 - 8,630,487 (-)NCBIHuRef
CHM1_11531,284,115 - 31,444,331 (-)NCBICHM1_1
T2T-CHM13v2.01528,795,157 - 28,955,270 (-)NCBIT2T-CHM13v2.0
Trpm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39763,803,583 - 63,923,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl763,803,583 - 63,919,523 (+)EnsemblGRCm39 Ensembl
GRCm38764,153,835 - 64,269,772 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl764,153,835 - 64,269,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37771,298,721 - 71,414,658 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36764,032,878 - 64,148,722 (+)NCBIMGSCv36mm8
Celera761,596,535 - 61,712,952 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map734.61NCBI
Trpm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,130,686 - 127,247,219 (+)NCBIGRCr8
mRatBN7.21117,718,896 - 117,835,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,718,896 - 117,834,605 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1125,693,996 - 125,809,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,876,553 - 132,992,162 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01125,707,003 - 125,822,518 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01124,983,391 - 125,101,759 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,983,452 - 125,099,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01126,092,991 - 126,210,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41118,583,516 - 118,700,653 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1109,974,992 - 110,090,741 (+)NCBICelera
Cytogenetic Map1q22NCBI
Trpm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541629,814,077 - 29,939,344 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541629,846,374 - 29,880,922 (-)NCBIChiLan1.0ChiLan1.0
TRPM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21619,808,237 - 19,886,134 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11524,532,668 - 24,693,365 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0159,492,500 - 9,653,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11528,530,878 - 28,690,947 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1528,530,878 - 28,690,947 (-)Ensemblpanpan1.1panPan2
TRPM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,860,730 - 37,949,108 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,817,339 - 37,949,108 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha340,503,547 - 40,626,849 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,199,294 - 38,329,018 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,191,370 - 38,329,018 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,731,034 - 37,854,661 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,984,595 - 38,114,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,194,873 - 38,318,556 (+)NCBIUU_Cfam_GSD_1.0
TRPM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1143,709,864 - 143,855,984 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11143,718,295 - 143,856,968 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21159,663,385 - 159,801,269 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12651,560,992 - 51,660,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2651,586,041 - 51,660,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604889,165,059 - 89,239,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247681,757,293 - 1,873,627 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247681,802,601 - 1,873,627 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000012796   ⟹   ENSSTOP00000011470
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936483724,018 - 855,012 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000030443   ⟹   ENSSTOP00000027414
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936483786,150 - 811,092 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000032462   ⟹   ENSSTOP00000031517
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936483724,018 - 855,012 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034487   ⟹   ENSSTOP00000025749
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936483756,104 - 858,855 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036487   ⟹   ENSSTOP00000031061
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936483786,150 - 855,012 (+)Ensembl
RefSeq Acc Id: XM_021722837   ⟹   XP_021578512
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640145,477,644 - 145,610,678 (-)NCBI
SpeTri2.0NW_004936483723,784 - 856,839 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021578512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011470.3
  ENSSTOP00000025749.1
  ENSSTOP00000027414.1
  ENSSTOP00000031061.1
  ENSSTOP00000031517.1
GenBank Protein KAG3262710 (Get FASTA)   NCBI Sequence Viewer  
  KAG3262711 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021578512   ⟸   XM_021722837
- UniProtKB: I3MJT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000025749   ⟸   ENSSTOT00000034487
RefSeq Acc Id: ENSSTOP00000031061   ⟸   ENSSTOT00000036487
RefSeq Acc Id: ENSSTOP00000011470   ⟸   ENSSTOT00000012796
RefSeq Acc Id: ENSSTOP00000027414   ⟸   ENSSTOT00000030443
RefSeq Acc Id: ENSSTOP00000031517   ⟸   ENSSTOT00000032462
Protein Domains
Ion transport   TRPM SLOG   TRPM tetramerisation


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012791 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012796.3 UniProtKB/TrEMBL
  ENSSTOT00000030443.1 UniProtKB/TrEMBL
  ENSSTOT00000032462.1 UniProtKB/TrEMBL
  ENSSTOT00000034487.1 UniProtKB/TrEMBL
  ENSSTOT00000036487.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1010 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  TRPM_SLOG UniProtKB/TrEMBL
  TRPM_tetra UniProtKB/TrEMBL
  TRPM_tetra_sf UniProtKB/TrEMBL
NCBI Gene Trpm1 ENTREZGENE
PANTHER PTHR13800:SF13 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  LSDAT_euk UniProtKB/TrEMBL
  TRPM_tetra UniProtKB/TrEMBL
UniProt A0A287CWW7_ICTTR UniProtKB/TrEMBL
  A0A287D1K0_ICTTR UniProtKB/TrEMBL
  A0A287DC43_ICTTR UniProtKB/TrEMBL
  A0A287DD81_ICTTR UniProtKB/TrEMBL
  I3MJT7 ENTREZGENE, UniProtKB/TrEMBL