Hgd (homogentisate 1,2-dioxygenase) - Rat Genome Database

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Gene: Hgd (homogentisate 1,2-dioxygenase) Ictidomys tridecemlineatus
Analyze
Symbol: Hgd
Name: homogentisate 1,2-dioxygenase
RGD ID: 12667309
Description: ENCODES a protein that exhibits dioxygenase activity (inferred); homogentisate 1,2-dioxygenase activity (inferred); identical protein binding (inferred); INVOLVED IN amino acid metabolic process (ortholog); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; ASSOCIATED WITH alkaptonuria (ortholog); Alkaptonuric Ochronosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,162,151 - 130,207,463 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365367,314,754 - 7,352,222 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365367,314,548 - 7,359,426 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hgd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,162,151 - 130,207,463 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365367,314,754 - 7,352,222 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365367,314,548 - 7,359,426 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HGD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383120,628,172 - 120,682,239 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3120,628,172 - 120,682,269 (-)EnsemblGRCh38hg38GRCh38
GRCh373120,347,019 - 120,401,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363121,829,705 - 121,884,018 (-)NCBINCBI36Build 36hg18NCBI36
Celera3118,756,410 - 118,810,810 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3117,720,226 - 117,775,229 (-)NCBIHuRef
CHM1_13120,310,676 - 120,365,085 (-)NCBICHM1_1
T2T-CHM13v2.03123,348,044 - 123,402,117 (-)NCBIT2T-CHM13v2.0
Hgd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391637,400,104 - 37,452,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1637,400,515 - 37,452,382 (+)EnsemblGRCm39 Ensembl
GRCm381637,579,742 - 37,632,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1637,580,153 - 37,632,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv371637,580,239 - 37,632,112 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361637,499,489 - 37,551,259 (+)NCBIMGSCv36mm8
Celera1637,988,030 - 38,039,914 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.4NCBI
Hgd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81176,592,202 - 76,643,776 (-)NCBIGRCr8
mRatBN7.21163,086,750 - 63,138,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,086,752 - 63,138,323 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,899,210 - 71,950,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01164,561,435 - 64,613,001 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,611,104 - 63,662,387 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01165,983,221 - 66,034,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,983,221 - 66,034,573 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,075,116 - 69,126,725 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,876,269 - 64,928,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,933,859 - 64,985,832 (-)NCBI
Celera1162,583,352 - 62,634,571 (-)NCBICelera
Cytogenetic Map11q21NCBI
Hgd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542720,137,861 - 20,188,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542720,141,522 - 20,188,700 (-)NCBIChiLan1.0ChiLan1.0
HGD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,590,548 - 118,644,540 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13118,595,326 - 118,649,318 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03117,735,772 - 117,790,096 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13124,646,431 - 124,700,733 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3124,646,431 - 124,700,733 (-)Ensemblpanpan1.1panPan2
HGD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,066,099 - 24,107,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,066,306 - 24,151,354 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,095,501 - 24,137,233 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03324,305,826 - 24,347,869 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3324,306,037 - 24,391,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,106,833 - 24,148,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03324,146,893 - 24,188,831 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03324,711,359 - 24,753,085 (-)NCBIUU_Cfam_GSD_1.0
HGD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13139,660,343 - 139,710,404 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113139,660,315 - 139,710,402 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HGD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12260,136,293 - 60,192,275 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2260,137,532 - 60,192,430 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041106,112,902 - 106,170,562 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hgd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473127,548,922 - 27,604,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473127,549,245 - 27,604,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000015729   ⟹   ENSSTOP00000014077
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365367,314,754 - 7,352,222 (-)Ensembl
RefSeq Acc Id: XM_005327636   ⟹   XP_005327693
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602130,162,151 - 130,207,463 (+)NCBI
SpeTri2.0NW_0049365367,314,548 - 7,359,426 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014077.3
GenBank Protein KAG3271385 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327693   ⟸   XM_005327636
- UniProtKB: I3MQ91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014077   ⟸   ENSSTOT00000015729

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015729 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015729.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.10 UniProtKB/TrEMBL
InterPro HgmA_C UniProtKB/TrEMBL
  HgmA_N UniProtKB/TrEMBL
  Homogentis_dOase UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
  RmlC_Cupin_sf UniProtKB/TrEMBL
NCBI Gene Hgd ENTREZGENE
PANTHER HOMOGENTISATE 1,2-DIOXYGENASE UniProtKB/TrEMBL
  PTHR11056 UniProtKB/TrEMBL
Pfam HgmA UniProtKB/TrEMBL
  HgmA_N UniProtKB/TrEMBL
Superfamily-SCOP SSF51182 UniProtKB/TrEMBL
UniProt I3MQ91 ENTREZGENE, UniProtKB/TrEMBL