Myl10 (myosin light chain 10) - Rat Genome Database

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Gene: Myl10 (myosin light chain 10) Ictidomys tridecemlineatus
Analyze
Symbol: Myl10
Name: myosin light chain 10
RGD ID: 12662187
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myosin regulatory light chain 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,641,074 - 132,676,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,359,413 - 1,395,611 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,360,101 - 1,368,686 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,641,074 - 132,676,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,359,413 - 1,395,611 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,360,101 - 1,368,686 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,613,330 - 101,629,296 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,613,330 - 101,629,296 (-)EnsemblGRCh38hg38GRCh38
GRCh377101,256,610 - 101,272,576 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,043,475 - 101,059,118 (-)NCBINCBI36Build 36hg18NCBI36
Celera796,264,670 - 96,280,650 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef795,845,759 - 95,861,739 (-)NCBIHuRef
CHM1_17101,188,570 - 101,204,545 (-)NCBICHM1_1
T2T-CHM13v2.07102,933,202 - 102,949,180 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,614,992 - 100,630,963 (-)NCBI
Myl10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,717,749 - 136,730,711 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,722,000 - 136,729,948 (+)EnsemblGRCm39 Ensembl
GRCm385136,688,892 - 136,701,857 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,693,146 - 136,701,094 (+)EnsemblGRCm38mm10GRCm38
MGSCv375137,169,016 - 137,176,964 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,977,773 - 136,985,721 (+)NCBIMGSCv36mm8
Celera5133,714,303 - 133,722,952 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.03NCBI
Myl10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,606,558 - 25,619,270 (-)NCBIGRCr8
mRatBN7.21219,969,174 - 19,982,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,970,055 - 19,978,614 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01223,011,817 - 23,075,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,011,942 - 23,021,517 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,014,687 - 25,076,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,082,810 - 21,095,985 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1221,742,549 - 21,805,591 (-)NCBICelera
Cytogenetic Map12q12NCBI
Myl10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,754,234 - 15,763,987 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545615,754,234 - 15,763,987 (+)NCBIChiLan1.0ChiLan1.0
MYL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,623,857 - 119,639,811 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17167,888,482 - 167,904,436 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,751,255 - 93,767,214 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,986,547 - 107,002,325 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,986,697 - 107,002,148 (-)Ensemblpanpan1.1panPan2
MYL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,313,891 - 8,333,518 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,301,401 - 8,333,520 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,011,744 - 10,031,367 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,133,669 - 8,153,299 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,142,574 - 8,153,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,089,981 - 8,109,600 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,064,717 - 8,084,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,229,569 - 8,249,192 (+)NCBIUU_Cfam_GSD_1.0
MYL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,187,812 - 9,198,493 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.139,187,808 - 9,198,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,726,761 - 8,738,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12811,559,077 - 11,570,826 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660704,828,432 - 4,845,614 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myl10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,773,217 - 15,784,513 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,731,519 - 15,784,472 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000024086   ⟹   ENSSTOP00000022759
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365431,359,413 - 1,395,611 (-)Ensembl
RefSeq Acc Id: XM_005328495   ⟹   XP_005328552
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344132,667,768 - 132,676,429 (+)NCBI
SpeTri2.0NW_0049365431,360,101 - 1,368,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040278226   ⟹   XP_040134160
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344132,641,074 - 132,676,429 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005328552 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134160 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022759.1
GenBank Protein KAG3259851 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328552   ⟸   XM_005328495
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040134160   ⟸   XM_040278226
- Peptide Label: isoform X2
- UniProtKB: I3NEG2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000022759   ⟸   ENSSTOT00000024086
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028388 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024086.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Myosin_RLC UniProtKB/TrEMBL
NCBI Gene Myl10 ENTREZGENE
PANTHER MYOSIN REGULATORY LIGHT CHAIN 10 UniProtKB/TrEMBL
  MYOSIN REGULATORY LIGHT CHAIN 2 UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3NEG2 ENTREZGENE, UniProtKB/TrEMBL