Sgcb (sarcoglycan beta) - Rat Genome Database

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Gene: Sgcb (sarcoglycan beta) Ictidomys tridecemlineatus
Analyze
Symbol: Sgcb
Name: sarcoglycan beta
RGD ID: 12658844
Description: INVOLVED IN cardiac muscle cell development (ortholog); gene expression (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2E (ortholog); cardiomyopathy (ortholog); FOUND IN dystroglycan complex (inferred); dystrophin-associated glycoprotein complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-sarcoglycan
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,134,873 - 31,147,425 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648215,150,125 - 15,163,394 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648215,150,805 - 15,163,340 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sgcb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,134,873 - 31,147,425 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648215,150,125 - 15,163,394 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648215,150,805 - 15,163,340 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGCB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38452,020,706 - 52,038,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl452,020,706 - 52,038,299 (-)EnsemblGRCh38hg38GRCh38
GRCh37452,886,872 - 52,904,465 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36452,581,629 - 52,599,203 (-)NCBINCBI36Build 36hg18NCBI36
Build 34452,727,799 - 52,745,374NCBI
Celera450,381,940 - 50,399,524 (-)NCBICelera
Cytogenetic Map4q12NCBI
HuRef448,828,371 - 48,845,953 (-)NCBIHuRef
CHM1_1452,922,469 - 52,940,041 (-)NCBICHM1_1
T2T-CHM13v2.0455,506,644 - 55,524,238 (-)NCBIT2T-CHM13v2.0
Sgcb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,790,092 - 73,805,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,790,092 - 73,805,133 (-)EnsemblGRCm39 Ensembl
GRCm38573,632,749 - 73,647,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl573,632,749 - 73,647,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv37574,023,988 - 74,038,970 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,912,749 - 73,926,879 (-)NCBIMGSCv36mm8
Celera570,889,147 - 70,904,129 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map538.89NCBI
Sgcb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81434,917,663 - 34,932,661 (+)NCBIGRCr8
mRatBN7.21434,563,614 - 34,578,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1434,563,608 - 34,578,583 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1434,923,468 - 34,938,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,231,083 - 36,246,101 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01434,716,540 - 34,731,558 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,113,194 - 37,128,623 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,113,210 - 37,128,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01436,936,100 - 36,951,529 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41436,959,920 - 36,974,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1433,826,171 - 33,841,169 (+)NCBICelera
Cytogenetic Map14p11NCBI
Sgcb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544718,459,562 - 18,469,324 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544718,459,562 - 18,472,367 (+)NCBIChiLan1.0ChiLan1.0
SGCB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2377,777,752 - 77,795,262 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1477,981,881 - 77,999,362 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0471,924,051 - 71,942,642 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1478,481,591 - 78,494,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl478,476,969 - 78,491,156 (+)Ensemblpanpan1.1panPan2
SGCB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,969,483 - 44,987,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,972,473 - 44,987,184 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,922,372 - 44,939,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01345,577,858 - 45,595,633 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1345,577,858 - 45,595,691 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11345,246,267 - 45,263,792 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,781,370 - 44,799,095 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01345,658,522 - 45,676,031 (-)NCBIUU_Cfam_GSD_1.0
SGCB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl839,127,545 - 39,148,814 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1839,130,371 - 39,148,756 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2841,306,153 - 41,324,541 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGCB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1716,400,865 - 16,418,955 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl716,405,641 - 16,415,727 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606617,465,496 - 17,489,010 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgcb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476117,670,887 - 17,688,659 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476117,670,920 - 17,690,513 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013356273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000004561   ⟹   ENSSTOP00000004092
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648215,150,125 - 15,163,394 (-)Ensembl
RefSeq Acc Id: XM_013356273   ⟹   XP_013211727
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528531,134,873 - 31,147,425 (+)NCBI
SpeTri2.0NW_00493648215,150,805 - 15,163,340 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013211727 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004092.2
GenBank Protein KAG3276628 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013211727   ⟸   XM_013356273
- UniProtKB: I3M4H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004092   ⟸   ENSSTOT00000004561


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004569 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004561.3 UniProtKB/TrEMBL
InterPro Sarcoglycan UniProtKB/TrEMBL
  Sgcb UniProtKB/TrEMBL
NCBI Gene Sgcb ENTREZGENE
PANTHER BETA-SARCOGLYCAN UniProtKB/TrEMBL
  PTHR21142 UniProtKB/TrEMBL
Pfam Sarcoglycan_1 UniProtKB/TrEMBL
UniProt I3M4H3 ENTREZGENE, UniProtKB/TrEMBL