Iapp (islet amyloid polypeptide) - Rat Genome Database

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Gene: Iapp (islet amyloid polypeptide) Ictidomys tridecemlineatus
Analyze
Symbol: Iapp
Name: islet amyloid polypeptide
RGD ID: 12655813
Description: ENCODES a protein that exhibits lipid binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); amylin receptor signaling pathway (ortholog); amyloid fibril formation (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); gastric ulcer (ortholog); genetic disease (ortholog); FOUND IN inclusion body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101954740
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,540,811 - 87,546,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,463,828 - 5,469,139 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,463,829 - 5,469,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Iapp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,540,811 - 87,546,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,463,828 - 5,469,139 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,463,829 - 5,469,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IAPP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,354,959 - 21,379,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,354,959 - 21,379,980 (+)EnsemblGRCh38hg38GRCh38
GRCh371221,507,893 - 21,532,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,417,085 - 21,423,683 (+)NCBINCBI36Build 36hg18NCBI36
Build 341221,417,084 - 21,423,683NCBI
Celera1226,681,196 - 26,688,308 (+)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,299,907 - 21,307,017 (+)NCBIHuRef
CHM1_11221,491,270 - 21,498,381 (+)NCBICHM1_1
T2T-CHM13v2.01221,233,632 - 21,258,654 (+)NCBIT2T-CHM13v2.0
Iapp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,244,151 - 142,249,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,244,149 - 142,249,687 (+)EnsemblGRCm39 Ensembl
GRCm386142,298,425 - 142,303,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,298,423 - 142,303,961 (+)EnsemblGRCm38mm10GRCm38
MGSCv376142,246,945 - 142,252,340 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366142,255,650 - 142,261,039 (+)NCBIMGSCv36mm8
Celera6145,357,925 - 145,363,320 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map673.81NCBI
Iapp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84176,968,097 - 176,975,363 (+)NCBIGRCr8
mRatBN7.24175,237,107 - 175,244,373 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,237,115 - 175,242,920 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4181,532,318 - 181,537,233 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,316,585 - 177,321,500 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04175,937,142 - 175,942,057 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,509,863 - 176,517,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,510,696 - 176,516,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04240,723,950 - 240,731,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44179,855,956 - 179,860,871 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14180,100,696 - 180,106,512 (+)NCBI
Celera4163,770,383 - 163,775,298 (+)NCBICelera
RH 3.4 Map41043.4RGD
Cytogenetic Map4q44NCBI
Iapp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541316,835,037 - 16,840,682 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541316,834,940 - 16,841,071 (-)NCBIChiLan1.0ChiLan1.0
IAPP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,425,109 - 75,432,306 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,421,507 - 75,428,704 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,918,000 - 64,925,191 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,520,986 - 67,528,103 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,520,986 - 67,528,103 (-)Ensemblpanpan1.1panPan2
IAPP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12726,295,481 - 26,299,967 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2726,295,481 - 26,299,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2720,156,535 - 20,161,021 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02726,621,265 - 26,625,751 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2726,621,265 - 26,625,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12726,484,470 - 26,488,955 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02726,462,824 - 26,467,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02719,861,411 - 19,865,898 (+)NCBIUU_Cfam_GSD_1.0
IAPP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl552,046,573 - 52,050,446 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1552,046,570 - 52,051,475 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,323,381 - 55,327,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IAPP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,240,947 - 21,247,409 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,241,514 - 21,247,207 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606913,897,267 - 13,904,564 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iapp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475217,584,225 - 17,593,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475217,528,214 - 17,594,622 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000020097   ⟹   ENSSTOP00000015896
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365485,463,828 - 5,469,139 (-)Ensembl
RefSeq Acc Id: XM_005328932   ⟹   XP_005328989
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494587,540,811 - 87,546,687 (-)NCBI
SpeTri2.0NW_0049365485,463,829 - 5,469,136 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015896.2
GenBank Protein KAG3292291 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005328989   ⟸   XM_005328932
- UniProtKB: I3MUV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000015896   ⟸   ENSSTOT00000020097
Protein Domains
Calcitonin peptide-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027273 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020097.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2190 UniProtKB/TrEMBL
InterPro Calcitonin-like UniProtKB/TrEMBL
  Calcitonin/adrenomedullin UniProtKB/TrEMBL
  Calcitonin_CS UniProtKB/TrEMBL
  Calcitonin_peptide-like UniProtKB/TrEMBL
  IAPP UniProtKB/TrEMBL
NCBI Gene Iapp ENTREZGENE
PANTHER PTHR10505 UniProtKB/TrEMBL
  PTHR10505:SF4 UniProtKB/TrEMBL
Pfam Calc_CGRP_IAPP UniProtKB/TrEMBL
PRINTS ISLETAMYLOID UniProtKB/TrEMBL
PROSITE CALCITONIN UniProtKB/TrEMBL
SMART CALCITONIN UniProtKB/TrEMBL
UniProt I3MUV1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Iapp  islet amyloid polypeptide  LOC101954740  islet amyloid polypeptide  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101954740  islet amyloid polypeptide  Iapp  islet amyloid polypeptide  Symbol and/or name change 5135510 APPROVED