Pdhx (pyruvate dehydrogenase complex component X) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pdhx (pyruvate dehydrogenase complex component X) Ictidomys tridecemlineatus
Analyze
Symbol: Pdhx
Name: pyruvate dehydrogenase complex component X
RGD ID: 12654510
Description: ENCODES a protein that exhibits pyruvate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN acetyl-CoA biosynthetic process from pyruvate (inferred); carboxylic acid metabolic process (inferred); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); pyruvate decarboxylase deficiency (ortholog); FOUND IN obsolete mitochondrial pyruvate dehydrogenase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pyruvate dehydrogenase protein X component, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,028,955 - 30,091,172 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,154,314 - 3,215,819 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,153,461 - 3,215,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pdhx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,028,955 - 30,091,172 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,154,314 - 3,215,819 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,153,461 - 3,215,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDHX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,915,920 - 34,996,128 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1134,915,829 - 35,020,591 (+)EnsemblGRCh38hg38GRCh38
GRCh371134,937,985 - 35,017,675 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,894,741 - 34,974,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341134,894,740 - 34,974,092NCBI
Celera1135,085,014 - 35,165,000 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1134,636,155 - 34,716,134 (+)NCBIHuRef
CHM1_11134,935,934 - 35,015,929 (+)NCBICHM1_1
T2T-CHM13v2.01135,054,373 - 35,134,137 (+)NCBIT2T-CHM13v2.0
Pdhx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,851,400 - 102,903,858 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,851,420 - 102,903,858 (-)EnsemblGRCm39 Ensembl
GRCm382103,021,055 - 103,073,513 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,021,075 - 103,073,513 (-)EnsemblGRCm38mm10GRCm38
MGSCv372102,861,212 - 102,913,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362102,821,916 - 102,874,350 (-)NCBIMGSCv36mm8
Celera2104,263,925 - 104,317,607 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.25NCBI
Pdhx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,826,579 - 109,886,869 (-)NCBIGRCr8
mRatBN7.2389,372,248 - 89,431,779 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,371,497 - 89,431,773 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx392,871,545 - 92,931,032 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,470,579 - 101,530,066 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,294,402 - 99,359,002 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,910,300 - 92,933,725 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,909,725 - 92,969,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,552,950 - 99,576,700 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4388,240,250 - 88,270,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera388,451,544 - 88,474,645 (-)NCBICelera
Cytogenetic Map3q32NCBI
Pdhx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,335,766 - 11,405,565 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542211,335,766 - 11,405,565 (-)NCBIChiLan1.0ChiLan1.0
PDHX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2937,137,062 - 37,216,510 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,141,767 - 37,221,219 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,889,242 - 34,968,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,764,450 - 34,844,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,764,450 - 34,844,166 (+)Ensemblpanpan1.1panPan2
PDHX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,947,883 - 33,011,845 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,917,858 - 33,011,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,553,818 - 32,617,646 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,558,412 - 33,622,940 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,555,858 - 33,622,903 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,118,411 - 33,182,904 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,703,851 - 32,774,181 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01833,345,081 - 33,409,593 (-)NCBIUU_Cfam_GSD_1.0
PDHX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,014,970 - 26,103,402 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,014,954 - 26,094,895 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2228,381,683 - 28,461,798 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDHX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1130,270,567 - 30,344,929 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl130,269,957 - 30,344,494 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038127,384,875 - 127,458,466 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdhx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476712,178,505 - 12,257,457 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004413   ⟹   ENSSTOP00000003957
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365333,154,314 - 3,215,819 (-)Ensembl
RefSeq Acc Id: XM_040283730   ⟹   XP_040139664
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494730,028,955 - 30,091,172 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040139664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003957.3
RefSeq Acc Id: XP_040139664   ⟸   XM_040283730
RefSeq Acc Id: ENSSTOP00000003957   ⟸   ENSSTOT00000004413

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004403 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004413.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/TrEMBL
  3.30.559.10 UniProtKB/TrEMBL
  4.10.320.10 UniProtKB/TrEMBL
InterPro 2-oxoA_DH_lipoyl-BS UniProtKB/TrEMBL
  2-oxoacid_DH_actylTfrase UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/TrEMBL
  E2/Pdx1 UniProtKB/TrEMBL
  E3-bd_dom_sf UniProtKB/TrEMBL
  PSBD UniProtKB/TrEMBL
  Single_hybrid_motif UniProtKB/TrEMBL
NCBI Gene Pdhx ENTREZGENE
PANTHER PTHR23151 UniProtKB/TrEMBL
  PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam 2-oxoacid_dh UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/TrEMBL
  E3_binding UniProtKB/TrEMBL
PROSITE BIOTINYL_LIPOYL UniProtKB/TrEMBL
  LIPOYL UniProtKB/TrEMBL
  PSBD UniProtKB/TrEMBL
Superfamily-SCOP CoA-dependent acyltransferases UniProtKB/TrEMBL
  SSF47005 UniProtKB/TrEMBL
  SSF51230 UniProtKB/TrEMBL
UniProt I3M470_ICTTR UniProtKB/TrEMBL