Asic1 (acid sensing ion channel subunit 1) - Rat Genome Database

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Gene: Asic1 (acid sensing ion channel subunit 1) Ictidomys tridecemlineatus
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Symbol: Asic1
Name: acid sensing ion channel subunit 1
RGD ID: 12649165
Description: ENCODES a protein that exhibits inorganic cation transmembrane transporter activity (ortholog); monoatomic ion channel activity (ortholog); pH-gated monoatomic ion channel activity (ortholog); INVOLVED IN associative learning (ortholog); behavioral fear response (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); brain ischemia (ortholog); epilepsy (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acid sensing ion channel subunit 1, transcript variant X1; acid sensing ion channel subunit 1, transcript variant X2; acid sensing ion channel subunit 1, transcript variant X3; acid sensing ion channel subunit 1, transcript variant X4; acid-sensing (proton-gated) ion channel 1; acid-sensing ion channel 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,418,273 - 65,444,825 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,720,523 - 7,746,579 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,720,591 - 7,746,557 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Asic1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,418,273 - 65,444,825 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,720,523 - 7,746,579 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,720,591 - 7,746,557 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASIC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,057,596 - 50,083,622 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,057,548 - 50,083,611 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,451,379 - 50,477,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,737,754 - 48,763,661 (+)NCBINCBI36Build 36hg18NCBI36
Build 341248,737,753 - 48,763,660NCBI
Celera1249,246,955 - 49,272,856 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,485,455 - 47,510,311 (+)NCBIHuRef
CHM1_11250,417,567 - 50,443,552 (+)NCBICHM1_1
T2T-CHM13v2.01250,020,656 - 50,046,680 (+)NCBIT2T-CHM13v2.0
Asic1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,568,090 - 99,599,011 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,568,249 - 99,599,011 (+)EnsemblGRCm39 Ensembl
GRCm381599,670,197 - 99,701,130 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,670,368 - 99,701,130 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,501,149 - 99,531,559 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,498,752 - 99,529,162 (+)NCBIMGSCv36mm8
Celera15101,826,413 - 101,856,974 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Asic1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,677,158 - 132,707,379 (+)NCBIGRCr8
mRatBN7.27130,798,317 - 130,828,535 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,799,917 - 130,828,541 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,603,489 - 132,632,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,829,075 - 134,857,723 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,741,599 - 134,770,248 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,324,714 - 141,354,937 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,326,321 - 141,354,937 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,830,166 - 115,859,585 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,414,656 - 138,443,272 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,491,092 - 138,517,829 (+)NCBI
Celera7127,281,326 - 127,309,938 (+)NCBICelera
Cytogenetic Map7q36NCBI
Asic1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547635,638 - 658,541 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547635,714 - 658,541 (+)NCBIChiLan1.0ChiLan1.0
ASIC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,105,768 - 44,132,086 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,102,536 - 44,128,341 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,672,253 - 38,698,247 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,569,149 - 39,593,822 (-)NCBIpanpan1.1PanPan1.1panPan2
ASIC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,638,826 - 4,663,352 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,638,812 - 4,648,038 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,594,907 - 41,619,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,687,973 - 4,712,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,687,975 - 4,711,469 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,652,821 - 4,677,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,642,373 - 4,667,009 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,989,720 - 42,014,370 (+)NCBIUU_Cfam_GSD_1.0
ASIC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,965,084 - 15,991,876 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,965,082 - 15,991,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,354,884 - 16,365,975 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASIC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,286,665 - 46,313,016 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,287,787 - 46,314,177 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,808,378 - 199,835,287 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asic1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,228,440 - 2,253,004 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,228,440 - 2,253,798 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004912   ⟹   ENSSTOP00000004406
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365127,720,523 - 7,746,579 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000035305   ⟹   ENSSTOP00000029923
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365127,720,523 - 7,746,579 (+)Ensembl
RefSeq Acc Id: XM_005324933   ⟹   XP_005324990
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494565,418,273 - 65,428,201 (-)NCBI
SpeTri2.0NW_0049365127,736,363 - 7,746,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005324934   ⟹   XP_005324991
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494565,418,273 - 65,444,820 (-)NCBI
SpeTri2.0NW_0049365127,720,591 - 7,746,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013358480   ⟹   XP_013213934
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494565,418,273 - 65,428,206 (-)NCBI
SpeTri2.0NW_0049365127,736,363 - 7,746,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726148   ⟹   XP_021581823
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494565,418,273 - 65,444,825 (-)NCBI
SpeTri2.0NW_0049365127,720,591 - 7,746,557 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005731835
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494565,420,240 - 65,428,794 (-)NCBI
RefSeq Acc Id: XP_005324991   ⟸   XM_005324934
- Peptide Label: isoform X4
- UniProtKB: I3M539 (UniProtKB/TrEMBL),   A0A287D8Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013213934   ⟸   XM_013358480
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005324990   ⟸   XM_005324933
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021581823   ⟸   XM_021726148
- Peptide Label: isoform X3
- UniProtKB: A0A287D8Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004406   ⟸   ENSSTOT00000004912
RefSeq Acc Id: ENSSTOP00000029923   ⟸   ENSSTOT00000035305


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004908 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004912.3 UniProtKB/TrEMBL
  ENSSTOT00000035305.1 UniProtKB/TrEMBL
Gene3D-CATH acid-sensing ion channel 1 domain UniProtKB/TrEMBL
  Acid-sensing ion channel domain UniProtKB/TrEMBL
  YojJ-like UniProtKB/TrEMBL
InterPro ENaC UniProtKB/TrEMBL
  ENaC_chordates UniProtKB/TrEMBL
  ENaC_CS UniProtKB/TrEMBL
NCBI Gene Asic1 ENTREZGENE
PANTHER ACID-SENSING ION CHANNEL 1 UniProtKB/TrEMBL
  PTHR11690 UniProtKB/TrEMBL
Pfam ASC UniProtKB/TrEMBL
PRINTS AMINACHANNEL UniProtKB/TrEMBL
PROSITE ASC UniProtKB/TrEMBL
UniProt A0A287D8Q8 ENTREZGENE, UniProtKB/TrEMBL
  I3M539 ENTREZGENE, UniProtKB/TrEMBL