Hdac11 (histone deacetylase 11) - Rat Genome Database

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Pathways
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Gene: Hdac11 (histone deacetylase 11) Ictidomys tridecemlineatus
Analyze
Symbol: Hdac11
Name: histone deacetylase 11
RGD ID: 12621178
Description: ENCODES a protein that exhibits histone deacetylase activity (ortholog); INVOLVED IN oligodendrocyte development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,513,972 - 19,542,108 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936898148,891 - 177,471 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Hdac11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,513,972 - 19,542,108 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936898148,891 - 177,471 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38313,480,306 - 13,506,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl313,479,724 - 13,506,424 (+)EnsemblGRCh38hg38GRCh38
GRCh37313,521,806 - 13,547,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36313,496,824 - 13,521,834 (+)NCBINCBI36Build 36hg18NCBI36
Build 34313,496,823 - 13,521,834NCBI
Celera313,459,987 - 13,486,185 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef313,454,981 - 13,481,181 (+)NCBIHuRef
CHM1_1313,471,748 - 13,497,959 (+)NCBICHM1_1
T2T-CHM13v2.0313,480,765 - 13,506,873 (+)NCBIT2T-CHM13v2.0
Hdac11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,133,652 - 91,151,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,133,647 - 91,151,674 (+)EnsemblGRCm39 Ensembl
GRCm38691,156,670 - 91,174,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,156,665 - 91,174,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,106,809 - 91,124,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,122,319 - 91,140,187 (+)NCBIMGSCv36mm8
Celera693,049,682 - 93,067,648 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.38NCBI
Hdac11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,203,044 - 125,224,584 (+)NCBIGRCr8
mRatBN7.24123,645,873 - 123,667,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,650,157 - 123,667,405 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,117,113 - 129,134,383 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,891,560 - 124,908,832 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,516,120 - 123,533,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04122,781,095 - 122,798,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,781,095 - 122,798,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,747,330 - 187,764,590 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,326,168 - 125,343,417 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,570,644 - 125,587,876 (+)NCBI
Celera4112,570,281 - 112,587,541 (+)NCBICelera
Cytogenetic Map4q34NCBI
Hdac11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542912,890,879 - 12,907,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542912,890,939 - 12,907,749 (-)NCBIChiLan1.0ChiLan1.0
HDAC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,460,086 - 13,486,323 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1313,464,848 - 13,491,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0313,400,788 - 13,427,010 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1313,744,425 - 13,769,997 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl313,744,475 - 13,769,997 (+)Ensemblpanpan1.1panPan2
HDAC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,792,832 - 3,815,922 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl203,792,693 - 3,837,192 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,832,891 - 3,855,869 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,815,086 - 3,838,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,815,104 - 3,838,043 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1203,534,218 - 3,557,209 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,856,940 - 3,879,907 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,821,892 - 3,844,896 (+)NCBIUU_Cfam_GSD_1.0
HDAC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,860,658 - 70,879,856 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,860,650 - 70,879,863 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21378,557,476 - 78,589,847 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12249,470,443 - 49,497,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2249,471,368 - 49,498,178 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041116,999,596 - 117,027,046 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479612,666,403 - 12,683,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479612,666,544 - 12,683,223 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040291537   ⟹   XP_040147471
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494219,513,972 - 19,542,108 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040147471 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009419.3
  ENSSTOP00000027655.1
  ENSSTOP00000031330.1
GenBank Protein KAG3295186 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040147471   ⟸   XM_040291537
Protein Domains
Histone deacetylase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010497 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010496.3 UniProtKB/TrEMBL
  ENSSTOT00000039698.1 UniProtKB/TrEMBL
  ENSSTOT00000040675.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
InterPro His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/TrEMBL
NCBI Gene Hdac11 ENTREZGENE
Pfam Hist_deacetyl UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A287D2B8_ICTTR UniProtKB/TrEMBL
  A0A287DCN2_ICTTR UniProtKB/TrEMBL
  I3MFL3_ICTTR UniProtKB/TrEMBL