Slc25a1 (solute carrier family 25 member 1) - Rat Genome Database

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Gene: Slc25a1 (solute carrier family 25 member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc25a1
Name: solute carrier family 25 member 1
RGD ID: 12616981
Description: ENCODES a protein that exhibits antiporter activity (inferred); citrate secondary active transmembrane transporter activity (inferred); tricarboxylic acid transmembrane transporter activity (inferred); INVOLVED IN mitochondrial citrate transmembrane transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tricarboxylate transport protein, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,573,117 - 139,576,194 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,177,871 - 3,181,099 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,177,868 - 3,181,095 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc25a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,573,117 - 139,576,194 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,177,871 - 3,181,099 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,177,868 - 3,181,095 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,175,581 - 19,178,736 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,175,581 - 19,178,739 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,163,094 - 19,166,249 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,543,095 - 17,546,285 (-)NCBINCBI36Build 36hg18NCBI36
Build 342217,537,648 - 17,540,839NCBI
Celera223,015,039 - 3,018,281 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef222,784,165 - 2,787,414 (-)NCBIHuRef
CHM1_12219,162,601 - 19,165,887 (-)NCBICHM1_1
T2T-CHM13v2.02219,551,495 - 19,554,686 (-)NCBIT2T-CHM13v2.0
Slc25a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,743,075 - 17,746,083 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,743,087 - 17,746,083 (-)EnsemblGRCm39 Ensembl
GRCm381617,925,211 - 17,928,219 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,925,223 - 17,928,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,925,304 - 17,928,312 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,838,786 - 17,841,726 (-)NCBIMGSCv36mm8
Celera1618,498,276 - 18,501,284 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.11NCBI
Slc25a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,560,054 - 96,563,071 (+)NCBIGRCr8
mRatBN7.21183,055,764 - 83,058,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,055,748 - 83,058,781 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,784,347 - 91,787,364 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,445,481 - 84,448,498 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,499,096 - 83,502,113 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,204,248 - 87,207,265 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,204,175 - 87,207,264 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,295,813 - 90,298,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,043,902 - 85,046,919 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,084,587 - 85,087,515 (+)NCBI
Celera1181,831,785 - 81,834,802 (+)NCBICelera
Cytogenetic Map11q23NCBI
Slc25a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,804,319 - 18,808,900 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,804,319 - 18,807,353 (+)NCBIChiLan1.0ChiLan1.0
SLC25A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22328,797,278 - 28,800,600 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,344,710 - 31,348,304 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0221,931,623 - 1,934,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,609,157 - 17,612,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,609,157 - 17,612,463 (-)Ensemblpanpan1.1panPan2
SLC25A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,002,732 - 30,006,696 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,002,861 - 30,005,444 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,956,809 - 29,960,686 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,403,987 - 31,407,864 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,403,949 - 31,407,414 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,452,587 - 29,456,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,076,886 - 29,080,763 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,164,721 - 30,168,599 (+)NCBIUU_Cfam_GSD_1.0
SLC25A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,974,617 - 50,978,039 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,974,616 - 51,002,970 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,541,583 - 54,544,449 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,569,627 - 6,572,872 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666085360,112 - 363,347 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945155,604 - 159,667 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945155,596 - 159,042 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002826   ⟹   ENSSTOP00000002529
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366193,177,871 - 3,181,099 (-)Ensembl
RefSeq Acc Id: XM_040291085   ⟹   XP_040147019
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118139,573,117 - 139,576,194 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040147019 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002529.3
GenBank Protein KAG3278671 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040147019   ⟸   XM_040291085
RefSeq Acc Id: ENSSTOP00000002529   ⟸   ENSSTOT00000002826


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002825 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002826.3 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc25a1 ENTREZGENE
PANTHER SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED UniProtKB/TrEMBL
  TRICARBOXYLATE TRANSPORT PROTEIN, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt I3M167_ICTTR UniProtKB/TrEMBL