Slc35d1 (solute carrier family 35 member D1) - Rat Genome Database

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Gene: Slc35d1 (solute carrier family 35 member D1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35d1
Name: solute carrier family 35 member D1
RGD ID: 12613906
Description: ENCODES a protein that exhibits pyrimidine nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN chondroitin sulfate biosynthetic process (ortholog); embryonic skeletal system development (ortholog); pyrimidine nucleotide-sugar transmembrane transport (ortholog); ASSOCIATED WITH connective tissue disease (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,914,628 - 79,957,792 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365914,531,403 - 4,570,631 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365914,519,136 - 4,574,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc35d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,914,628 - 79,957,792 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365914,531,403 - 4,570,631 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365914,519,136 - 4,574,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38166,972,976 - 67,054,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl166,999,350 - 67,054,148 (-)EnsemblGRCh38hg38GRCh38
GRCh37167,465,033 - 67,519,831 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36167,242,439 - 67,292,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 34167,181,871 - 67,231,749NCBI
Celera165,754,958 - 65,810,053 (-)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef165,573,672 - 65,628,761 (-)NCBIHuRef
CHM1_1167,580,377 - 67,635,467 (-)NCBICHM1_1
T2T-CHM13v2.0166,850,468 - 66,931,662 (-)NCBIT2T-CHM13v2.0
Slc35d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394103,027,846 - 103,078,208 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4103,027,846 - 103,072,361 (-)EnsemblGRCm39 Ensembl
GRCm384103,170,649 - 103,222,269 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4103,170,649 - 103,215,164 (-)EnsemblGRCm38mm10GRCm38
MGSCv374102,844,323 - 102,887,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,669,650 - 102,712,816 (-)NCBIMGSCv36mm8
Celera4101,536,380 - 101,579,459 (-)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.43NCBI
Slc35d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85123,157,739 - 123,210,350 (-)NCBIGRCr8
mRatBN7.25117,928,628 - 117,981,289 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,934,352 - 117,981,311 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5120,567,104 - 120,619,582 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05122,292,459 - 122,344,939 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05122,343,725 - 122,396,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,700,396 - 122,746,815 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,699,587 - 122,746,839 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05126,565,916 - 126,612,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45124,107,948 - 124,154,018 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15124,114,877 - 124,159,322 (-)NCBI
Celera5116,506,110 - 116,552,595 (-)NCBICelera
Cytogenetic Map5q33NCBI
Slc35d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542323,945,572 - 23,967,295 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542323,945,729 - 23,969,929 (+)NCBIChiLan1.0ChiLan1.0
SLC35D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,805,696 - 159,860,753 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,965,869 - 159,020,934 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,248,462 - 66,303,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1168,133,647 - 68,188,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl168,134,617 - 68,188,694 (-)Ensemblpanpan1.1panPan2
SLC35D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1543,474,641 - 43,522,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl543,474,674 - 43,522,042 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha543,605,848 - 43,646,219 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0543,660,195 - 43,707,778 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl543,660,222 - 43,707,771 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1543,626,120 - 43,673,701 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0543,572,080 - 43,619,644 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0543,812,270 - 43,859,859 (+)NCBIUU_Cfam_GSD_1.0
SLC35D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6145,533,537 - 145,596,066 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16145,532,600 - 145,596,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26134,374,868 - 134,383,870 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12066,055,933 - 66,114,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2066,056,924 - 66,109,654 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603351,480,961 - 51,538,885 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474228,008,656 - 28,037,921 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474228,008,637 - 28,039,246 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000010088   ⟹   ENSSTOP00000009049
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365914,531,678 - 4,570,631 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000033639   ⟹   ENSSTOP00000030049
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365914,531,403 - 4,570,631 (+)Ensembl
RefSeq Acc Id: XM_005332394   ⟹   XP_005332451
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505879,914,628 - 79,957,792 (-)NCBI
SpeTri2.0NW_0049365914,519,136 - 4,574,925 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332451 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009049.3
  ENSSTOP00000030049.1
GenBank Protein KAG3283351 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005332451   ⟸   XM_005332394
- UniProtKB: I3MET1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000030049   ⟸   ENSSTOT00000033639
RefSeq Acc Id: ENSSTOP00000009049   ⟸   ENSSTOT00000010088
Protein Domains
Sugar phosphate transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010086 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010088.3 UniProtKB/TrEMBL
  ENSSTOT00000033639.1 UniProtKB/TrEMBL
InterPro Sugar_P_trans_dom UniProtKB/TrEMBL
NCBI Gene Slc35d1 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
  UDP-GLUCURONIC ACID/UDP-N-ACETYLGALACTOSAMINE TRANSPORTER UniProtKB/TrEMBL
Pfam TPT UniProtKB/TrEMBL
UniProt A0A287D935_ICTTR UniProtKB/TrEMBL
  I3MET1 ENTREZGENE, UniProtKB/TrEMBL