Tmem43 (transmembrane protein 43) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tmem43 (transmembrane protein 43) Ictidomys tridecemlineatus
Analyze
Symbol: Tmem43
Name: transmembrane protein 43
RGD ID: 12596195
Description: ENCODES a protein that exhibits identical protein binding (inferred); protein self-association (inferred); INVOLVED IN nuclear membrane organization (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 5 (ortholog); FOUND IN endoplasmic reticulum lumen (inferred); Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,795,936 - 18,805,239 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602104,033 - 113,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602104,424 - 113,692 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmem43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,795,936 - 18,805,239 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602104,033 - 113,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602104,424 - 113,692 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,125,052 - 14,143,680 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,125,015 - 14,143,680 (+)EnsemblGRCh38hg38GRCh38
GRCh37314,166,552 - 14,185,180 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,141,546 - 14,160,180 (+)NCBINCBI36Build 36hg18NCBI36
Build 34314,141,545 - 14,160,180NCBI
Celera314,104,747 - 14,123,487 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,101,416 - 14,120,156 (+)NCBIHuRef
CHM1_1314,116,826 - 14,135,566 (+)NCBICHM1_1
T2T-CHM13v2.0314,126,997 - 14,145,625 (+)NCBIT2T-CHM13v2.0
Tmem43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,450,689 - 91,465,445 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,450,685 - 91,465,445 (+)EnsemblGRCm39 Ensembl
GRCm38691,473,707 - 91,488,463 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,473,703 - 91,488,463 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,423,745 - 91,438,452 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,439,255 - 91,453,962 (+)NCBIMGSCv36mm8
Celera693,367,030 - 93,381,749 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.54NCBI
Tmem43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,534,844 - 125,549,986 (+)NCBIGRCr8
mRatBN7.24123,977,680 - 123,992,823 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,977,625 - 123,992,825 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,443,668 - 129,458,799 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,218,096 - 125,233,227 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,842,650 - 123,857,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,118,468 - 123,133,610 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,118,468 - 123,133,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,412,090 - 187,427,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,656,685 - 125,671,827 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4112,897,141 - 112,912,283 (+)NCBICelera
Cytogenetic Map4q34NCBI
Tmem43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542916,921,469 - 16,934,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542916,921,469 - 16,934,978 (+)NCBIChiLan1.0ChiLan1.0
TMEM43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,102,492 - 14,121,309 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,107,362 - 14,126,071 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,043,369 - 14,062,064 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1314,383,724 - 14,402,485 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl314,383,983 - 14,400,587 (+)Ensemblpanpan1.1panPan2
TMEM43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1204,281,815 - 4,298,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl204,281,845 - 4,297,069 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha204,319,716 - 4,336,526 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0204,303,163 - 4,319,971 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl204,303,279 - 4,321,095 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,022,668 - 4,039,474 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0204,344,955 - 4,361,768 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0204,309,365 - 4,326,180 (+)NCBIUU_Cfam_GSD_1.0
TMEM43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,393,227 - 70,417,168 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,397,069 - 70,417,213 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,795,482 - 77,875,776 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,068,053 - 50,085,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2250,068,095 - 50,086,648 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041116,409,036 - 116,427,637 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248721,467,440 - 1,481,044 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248721,467,531 - 1,481,057 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000021229   ⟹   ENSSTOP00000023748
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936602104,033 - 113,738 (+)Ensembl
RefSeq Acc Id: XM_040291299   ⟹   XP_040147233
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494218,795,936 - 18,805,239 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040147233 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023748.2
GenBank Protein KAG3295168 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040147233   ⟸   XM_040291299
RefSeq Acc Id: ENSSTOP00000023748   ⟸   ENSSTOT00000021229


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029232 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021229.2 UniProtKB/TrEMBL
InterPro TMEM43_fam UniProtKB/TrEMBL
NCBI Gene Tmem43 ENTREZGENE
PANTHER PTHR13416 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 43 UniProtKB/TrEMBL
Pfam TMEM43 UniProtKB/TrEMBL
UniProt I3NHA1_ICTTR UniProtKB/TrEMBL