Dsg2 (desmoglein 2) - Rat Genome Database

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Gene: Dsg2 (desmoglein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Dsg2
Name: desmoglein 2
RGD ID: 12594048
Description: ENCODES a protein that exhibits calcium ion binding (inferred); cell adhesion molecule binding (inferred); INVOLVED IN maternal process involved in female pregnancy (ortholog); response to progesterone (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); arrhythmogenic right ventricular dysplasia 10 (ortholog); FOUND IN apical plasma membrane (ortholog); intercalated disc (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: desmoglein-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494453,674,706 - 53,721,731 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366821,676,290 - 1,722,783 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366821,676,301 - 1,725,132 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dsg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494453,674,706 - 53,721,731 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366821,676,290 - 1,722,783 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366821,676,301 - 1,725,132 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381831,498,177 - 31,549,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1831,498,177 - 31,549,008 (+)EnsemblGRCh38hg38GRCh38
GRCh371829,078,140 - 29,128,971 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361827,332,170 - 27,380,754 (+)NCBINCBI36Build 36hg18NCBI36
Build 341827,332,202 - 27,380,855NCBI
Celera1825,885,149 - 25,935,936 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1825,934,972 - 25,985,760 (+)NCBIHuRef
CHM1_11829,005,330 - 29,056,126 (+)NCBICHM1_1
T2T-CHM13v2.01831,688,704 - 31,739,535 (+)NCBIT2T-CHM13v2.0
Dsg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391820,691,247 - 20,737,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1820,691,131 - 20,737,578 (+)EnsemblGRCm39 Ensembl
GRCm381820,558,074 - 20,604,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1820,558,074 - 20,604,521 (+)EnsemblGRCm38mm10GRCm38
MGSCv371820,716,617 - 20,763,027 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361820,664,999 - 20,713,857 (+)NCBIMGSCv36mm8
MGSCv361820,701,117 - 20,745,819 (+)NCBIMGSCv36mm8
Celera1821,057,703 - 21,106,454 (+)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.42NCBI
Dsg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81812,121,287 - 12,179,590 (+)NCBIGRCr8
mRatBN7.21811,846,207 - 11,904,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1811,846,183 - 11,904,156 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01815,579,322 - 15,637,720 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,579,315 - 15,637,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,353,348 - 15,411,825 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,306,321 - 12,366,719 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11812,366,920 - 12,391,365 (+)NCBI
Celera1811,860,565 - 11,912,367 (+)NCBICelera
Cytogenetic Map18p12NCBI
Dsg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540218,826,400 - 18,876,188 (+)NCBIChiLan1.0ChiLan1.0
DSG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21748,890,802 - 48,941,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11834,583,398 - 34,634,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01824,716,181 - 24,766,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11828,313,240 - 28,363,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,313,223 - 28,363,786 (+)Ensemblpanpan1.1panPan2
DSG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1757,981,918 - 58,030,197 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl757,982,825 - 58,077,926 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha757,419,009 - 57,467,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0757,967,094 - 58,015,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl757,967,084 - 58,015,390 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1757,643,638 - 57,691,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0757,669,703 - 57,717,915 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0757,958,817 - 58,007,069 (-)NCBIUU_Cfam_GSD_1.0
DSG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6115,400,243 - 115,454,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16115,400,223 - 115,453,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26108,027,813 - 108,079,757 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DSG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11849,174,539 - 49,227,519 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1849,174,409 - 49,227,347 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605023,824,149 - 23,877,098 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dsg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247701,313,916 - 1,364,153 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247701,315,021 - 1,363,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000007520   ⟹   ENSSTOP00000006720
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366821,676,290 - 1,722,783 (-)Ensembl
RefSeq Acc Id: XM_005337462   ⟹   XP_005337519
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494453,674,706 - 53,721,731 (-)NCBI
SpeTri2.0NW_0049366821,676,301 - 1,725,132 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337519 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006720.3
GenBank Protein KAG3294032 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005337519   ⟸   XM_005337462
- UniProtKB: I3M9W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000006720   ⟸   ENSSTOT00000007520
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007528 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007520.3 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Catenin-bd_sf UniProtKB/TrEMBL
  Desmosomal_cadherin UniProtKB/TrEMBL
NCBI Gene Dsg2 ENTREZGENE
PANTHER DESMOGLEIN FAMILY MEMBER UniProtKB/TrEMBL
  DESMOGLEIN-2 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
  DESMOCADHERN UniProtKB/TrEMBL
  DESMOGLEIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt I3M9W6 ENTREZGENE, UniProtKB/TrEMBL