LOC101975324 (tubulin-specific chaperone cofactor E-like protein) - Rat Genome Database

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Gene: LOC101975324 (tubulin-specific chaperone cofactor E-like protein) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101975324 (Ensembl: TECTA)
Name: tubulin-specific chaperone cofactor E-like protein (Ensembl:tectorin alpha)
RGD ID: 12586303
Description: ENCODES a protein that exhibits extracellular matrix structural constituent (inferred); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 12 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 21 (ortholog); FOUND IN cytoskeleton (inferred); extracellular matrix (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-tectorin; Tbcel; Tecta; tectorin alpha; tectorin alpha, transcript variant X1; tectorin alpha, transcript variant X2; tubulin folding cofactor E like; tubulin folding cofactor E like, transcript variant X1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947102,890,261 - 103,030,533 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365425,811,660 - 5,869,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365425,884,624 - 5,951,260 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365425,884,624 - 5,951,260 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101975324
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947102,890,261 - 103,030,533 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365425,811,660 - 5,869,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365425,884,624 - 5,951,260 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365425,884,624 - 5,951,260 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TECTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811121,101,243 - 121,191,490 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11121,101,243 - 121,191,490 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,971,952 - 121,062,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611120,478,585 - 120,566,725 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411120,478,584 - 120,566,725NCBI
Celera11118,132,830 - 118,220,699 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,913,441 - 117,001,973 (+)NCBIHuRef
CHM1_111120,860,789 - 120,948,696 (+)NCBICHM1_1
T2T-CHM13v2.011121,124,974 - 121,216,595 (+)NCBIT2T-CHM13v2.0
Tecta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,240,918 - 42,312,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,240,915 - 42,311,225 (-)EnsemblGRCm39 Ensembl
GRCm38942,329,622 - 42,401,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,329,619 - 42,399,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,137,705 - 42,208,012 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,080,617 - 42,150,924 (-)NCBIMGSCv36mm8
Celera939,577,992 - 39,648,032 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.63NCBI
Tecta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8851,604,974 - 51,676,745 (-)NCBIGRCr8
mRatBN7.2842,707,962 - 42,779,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl842,707,962 - 42,779,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,201,774 - 48,273,754 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0846,480,455 - 46,552,429 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,348,035 - 44,420,015 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0846,603,728 - 46,675,658 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl846,603,728 - 46,675,544 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,076,279 - 45,150,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,306,930 - 45,383,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,315,694 - 45,392,191 (-)NCBI
Celera842,301,009 - 42,373,197 (-)NCBICelera
Cytogenetic Map8q22NCBI
Tecta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541222,062,618 - 22,131,442 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541222,062,618 - 22,132,037 (+)NCBIChiLan1.0ChiLan1.0
TECTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1512,879,963 - 12,949,211 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl512,879,951 - 12,949,147 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha512,934,828 - 13,090,846 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0512,825,291 - 12,981,682 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl512,825,284 - 12,895,918 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl512,908,607 - 12,981,239 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1512,945,862 - 13,101,569 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0512,867,901 - 13,023,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0512,906,575 - 13,062,644 (-)NCBIUU_Cfam_GSD_1.0
TECTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl948,120,837 - 48,200,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl948,211,798 - 48,286,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1948,120,786 - 48,286,275 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2953,362,425 - 53,493,518 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103248666
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,520,859 - 112,611,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,450,183 - 112,511,647 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl1112,527,558 - 112,611,850 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604313,467,150 - 13,632,734 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tecta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248804,041,020 - 4,122,377 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248804,040,402 - 4,122,377 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009638   ⟹   ENSSTOP00000008647
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365425,884,624 - 5,951,260 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000015899   ⟹   ENSSTOP00000014230
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365425,811,660 - 5,869,145 (+)Ensembl
RefSeq Acc Id: XM_005328385   ⟹   XP_005328442
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947102,890,286 - 102,947,793 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728534   ⟹   XP_021584209
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947102,890,261 - 103,030,533 (+)NCBI
SpeTri2.0NW_0049365425,884,624 - 5,951,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285389   ⟹   XP_040141323
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947102,890,766 - 102,947,793 (+)NCBI
RefSeq Acc Id: XM_040285390   ⟹   XP_040141324
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947102,903,509 - 102,947,793 (+)NCBI
RefSeq Acc Id: XR_001229858
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947102,890,286 - 102,947,341 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005733794
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947102,890,286 - 102,947,341 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021584209   ⟸   XM_021728534
- Peptide Label: isoform X2
- UniProtKB: I3MDX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328442   ⟸   XM_005328385
- Peptide Label: isoform X1
- UniProtKB: I3MQJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141323   ⟸   XM_040285389
- Peptide Label: isoform X1
- UniProtKB: I3MQJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141324   ⟸   XM_040285390
- Peptide Label: isoform X1
- UniProtKB: I3MQJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000014230   ⟸   ENSSTOT00000015899
RefSeq Acc Id: ENSSTOP00000008647   ⟸   ENSSTOT00000009638
Protein Domains
NIDO   Ubiquitin-like   VWFD   ZP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009622 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000015896 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009638.3 UniProtKB/TrEMBL
  ENSSTOT00000015899.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.4100 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Zona pellucida, ZP-N domain UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  NIDO_dom UniProtKB/TrEMBL
  Ser_inhib-like_sf UniProtKB/TrEMBL
  TBCEL_Ubl UniProtKB/TrEMBL
  TIL_dom UniProtKB/TrEMBL
  TILa_dom UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Unchr_dom_Cys-rich UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
  ZP-C UniProtKB/TrEMBL
  ZP_dom UniProtKB/TrEMBL
  ZP_dom_CS UniProtKB/TrEMBL
NCBI Gene Tecta ENTREZGENE
PANTHER ALPHA-TECTORIN-RELATED UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 UniProtKB/TrEMBL
  PTHR46160:SF3 UniProtKB/TrEMBL
Pfam LRR_9 UniProtKB/TrEMBL
  NIDO UniProtKB/TrEMBL
  PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  TILa UniProtKB/TrEMBL
  Ubiquitin_2 UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
  Zona_pellucida UniProtKB/TrEMBL
PROSITE NIDO UniProtKB/TrEMBL
  VWFD UniProtKB/TrEMBL
  ZP_1 UniProtKB/TrEMBL
  ZP_2 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  NIDO UniProtKB/TrEMBL
  SM00241 UniProtKB/TrEMBL
  SM00832 UniProtKB/TrEMBL
  VWC_out UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
  SSF57567 UniProtKB/TrEMBL
UniProt I3MDX9 ENTREZGENE, UniProtKB/TrEMBL
  I3MQJ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101975324  tubulin-specific chaperone cofactor E-like protein  Tecta  tectorin alpha  Symbol and/or name change 5135510 APPROVED
2021-03-25 Tecta  tectorin alpha  Tbcel  tubulin folding cofactor E like  Data merged from RGD:12556380 737654 PROVISIONAL