Bsn (bassoon presynaptic cytomatrix protein) - Rat Genome Database

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Gene: Bsn (bassoon presynaptic cytomatrix protein) Ictidomys tridecemlineatus
Analyze
Symbol: Bsn
Name: bassoon presynaptic cytomatrix protein
RGD ID: 12585395
Description: ENCODES a protein that exhibits dynein light chain binding (ortholog); enzyme inhibitor activity (ortholog); transcription corepressor binding (ortholog); INVOLVED IN axo-dendritic transport (ortholog); maintenance of presynaptic active zone structure (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN axon cytoplasm (ortholog); cell cortex (ortholog); cochlear hair cell ribbon synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bassoon presynaptic cytomatrix protein, transcript variant X1; bassoon presynaptic cytomatrix protein, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,422,347 - 64,527,292 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,182,810 - 1,280,657 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,182,872 - 1,287,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,422,347 - 64,527,292 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,182,810 - 1,280,657 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,182,872 - 1,287,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,554,477 - 49,673,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,554,477 - 49,671,549 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,591,910 - 49,708,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,566,926 - 49,683,986 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,566,925 - 49,683,980NCBI
Celera349,556,534 - 49,673,679 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,651,449 - 49,767,966 (+)NCBIHuRef
CHM1_1349,544,319 - 49,661,041 (+)NCBICHM1_1
T2T-CHM13v2.0349,583,475 - 49,700,809 (+)NCBIT2T-CHM13v2.0
Bsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,973,221 - 108,067,618 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,973,221 - 108,067,583 (-)EnsemblGRCm39 Ensembl
GRCm389108,096,022 - 108,190,419 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,096,022 - 108,190,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,998,353 - 108,092,714 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,961,291 - 108,048,359 (-)NCBIMGSCv36mm8
Celera9107,705,791 - 107,798,925 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Bsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,663,447 - 117,754,412 (-)NCBIGRCr8
mRatBN7.28108,784,849 - 108,875,819 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,788,542 - 108,875,819 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,411,051 - 114,502,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,610,375 - 112,701,351 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,453,016 - 110,543,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,873,721 - 116,965,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,873,721 - 116,965,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,227,802 - 116,319,071 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,364,208 - 113,455,766 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,387,192 - 113,475,221 (-)NCBI
Celera8108,089,061 - 108,180,178 (-)NCBICelera
Cytogenetic Map8q32NCBI
Bsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,527,477 - 1,570,670 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,527,336 - 1,578,394 (+)NCBIChiLan1.0ChiLan1.0
BSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,537,981 - 49,653,399 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,542,626 - 49,663,680 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,483,652 - 49,603,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,729,927 - 50,841,178 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,790,552 - 50,841,178 (+)Ensemblpanpan1.1panPan2
BSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,601,803 - 39,696,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,605,117 - 39,642,298 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,519,615 - 39,562,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,956,213 - 39,998,718 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,956,214 - 40,053,096 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,323,297 - 39,368,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,726,652 - 39,770,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,006,478 - 40,050,065 (-)NCBIUU_Cfam_GSD_1.0
BSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,159,630 - 32,195,578 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,106,967 - 32,203,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,341,713 - 35,382,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,953,901 - 11,066,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,018,966 - 11,059,701 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,934,160 - 156,048,808 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,498,257 - 3,593,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,498,118 - 3,600,488 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000023522   ⟹   ENSSTOP00000020534
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365291,182,810 - 1,280,657 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000031845   ⟹   ENSSTOP00000031409
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365291,182,986 - 1,280,657 (+)Ensembl
RefSeq Acc Id: XM_021727469   ⟹   XP_021583144
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560264,422,347 - 64,527,292 (+)NCBI
SpeTri2.0NW_0049365291,182,872 - 1,287,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269712   ⟹   XP_040125646
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560264,422,347 - 64,522,995 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021583144 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125646 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020534.2
  ENSSTOP00000031409.1
GenBank Protein KAG3270475 (Get FASTA)   NCBI Sequence Viewer  
  KAG3270476 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021583144   ⟸   XM_021727469
- UniProtKB: I3N838 (UniProtKB/TrEMBL),   A0A287DD04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125646   ⟸   XM_040269712
- UniProtKB: I3N838 (UniProtKB/TrEMBL),   A0A287DD04 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000020534   ⟸   ENSSTOT00000023522
RefSeq Acc Id: ENSSTOP00000031409   ⟸   ENSSTOT00000031845
Protein Domains
Zinc finger piccolo-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024936 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023522.2 UniProtKB/TrEMBL
  ENSSTOT00000031845.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Bsn UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_piccolo UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Bsn ENTREZGENE
PANTHER PICCOLO/BASSOON UniProtKB/TrEMBL
  PTHR14113:SF1 UniProtKB/TrEMBL
Pfam zf-piccolo UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A287DD04 ENTREZGENE, UniProtKB/TrEMBL
  I3N838 ENTREZGENE, UniProtKB/TrEMBL