Cacna1b (calcium voltage-gated channel subunit alpha1 B) - Rat Genome Database

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Gene: Cacna1b (calcium voltage-gated channel subunit alpha1 B) Ictidomys tridecemlineatus
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Symbol: Cacna1b
Name: calcium voltage-gated channel subunit alpha1 B
RGD ID: 12583621
Description: ENCODES a protein that exhibits high voltage-gated calcium channel activity (ortholog); protein phosphatase 2A binding (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); brain edema (ortholog); FOUND IN axon terminus (ortholog); basolateral plasma membrane (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent N-type calcium channel subunit alpha-1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947203,066,422 - 203,243,631 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669133,698 - 308,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669133,488 - 308,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacna1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947203,066,422 - 203,243,631 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669133,698 - 308,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669133,488 - 308,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,877,782 - 138,124,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,877,782 - 138,124,624 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,772,234 - 141,019,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,892,062 - 140,136,449 (+)NCBINCBI36Build 36hg18NCBI36
Build 349138,048,077 - 138,292,468NCBI
Cytogenetic Map9q34.3NCBI
HuRef9110,240,583 - 110,486,666 (+)NCBIHuRef
CHM1_19140,920,972 - 141,166,813 (+)NCBICHM1_1
T2T-CHM13v2.09150,142,926 - 150,389,904 (+)NCBIT2T-CHM13v2.0
Cacna1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,493,872 - 24,653,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,493,899 - 24,653,164 (-)EnsemblGRCm39 Ensembl
GRCm38224,603,860 - 24,763,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,603,887 - 24,763,152 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,461,895 - 24,618,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,428,384 - 24,585,161 (-)NCBIMGSCv36mm8
Celera224,325,634 - 24,485,472 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.58NCBI
Cacna1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8327,779,133 - 27,944,292 (-)NCBIGRCr8
mRatBN7.237,380,892 - 7,546,104 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,380,922 - 7,546,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,484,372 - 10,649,772 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,070,601 - 19,236,001 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,260,424 - 17,425,831 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.031,740,026 - 1,924,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl31,740,024 - 1,924,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.031,727,915 - 1,910,475 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.432,842,948 - 3,039,747 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.132,873,390 - 3,039,747 (-)NCBI
Celera32,215,805 - 2,379,072 (-)NCBICelera
Cytogenetic Map3p13NCBI
Cacna1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,654,238 - 5,824,386 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,654,915 - 5,823,094 (+)NCBIChiLan1.0ChiLan1.0
CACNA1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,216,085 - 1,470,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,218,419 - 1,472,359 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,989,621 - 109,256,841 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,935,165 - 138,147,969 (+)NCBIpanpan1.1PanPan1.1panPan2
CACNA1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,813,625 - 48,009,532 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,816,393 - 48,009,406 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,000,692 - 47,196,388 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,674,418 - 48,870,501 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1947,454,379 - 47,647,489 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,750,936 - 47,946,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,799,821 - 47,993,105 (-)NCBIUU_Cfam_GSD_1.0
CACNA1B
(Sus scrofa - pig)
No map positions available.
CACNA1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11275,441 - 335,980 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1278,011 - 335,820 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660585,057,291 - 5,305,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476081,236 - 257,787 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476078,754 - 257,901 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005336855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013363608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013363610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021734298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000004667   ⟹   ENSSTOP00000004189
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669133,698 - 308,488 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000040926   ⟹   ENSSTOP00000024136
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669133,698 - 308,488 (-)Ensembl
RefSeq Acc Id: XM_005336855   ⟹   XP_005336912
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,570 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363608   ⟹   XP_013219062
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,570 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363610   ⟹   XP_013219064
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,570 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734285   ⟹   XP_021589960
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,243,631 (+)NCBI
SpeTri2.0NW_004936669133,488 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734286   ⟹   XP_021589961
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734287   ⟹   XP_021589962
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734288   ⟹   XP_021589963
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734289   ⟹   XP_021589964
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734290   ⟹   XP_021589965
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,570 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734291   ⟹   XP_021589966
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734292   ⟹   XP_021589967
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734293   ⟹   XP_021589968
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734294   ⟹   XP_021589969
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734295   ⟹   XP_021589970
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,570 - 203,241,360 (+)NCBI
SpeTri2.0NW_004936669133,698 - 308,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286731   ⟹   XP_040142665
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,423 - 203,241,360 (+)NCBI
RefSeq Acc Id: XM_040286732   ⟹   XP_040142666
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947203,066,422 - 203,241,069 (+)NCBI
RefSeq Acc Id: XP_013219062   ⟸   XM_013363608
- Peptide Label: isoform X12
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013219064   ⟸   XM_013363610
- Peptide Label: isoform X13
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336912   ⟸   XM_005336855
- Peptide Label: isoform X14
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589960   ⟸   XM_021734285
- Peptide Label: isoform X2
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589969   ⟸   XM_021734294
- Peptide Label: isoform X10
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589968   ⟸   XM_021734293
- Peptide Label: isoform X9
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589965   ⟸   XM_021734290
- Peptide Label: isoform X6
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589962   ⟸   XM_021734287
- Peptide Label: isoform X3
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589966   ⟸   XM_021734291
- Peptide Label: isoform X7
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589967   ⟸   XM_021734292
- Peptide Label: isoform X8
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589964   ⟸   XM_021734289
- Peptide Label: isoform X5
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589963   ⟸   XM_021734288
- Peptide Label: isoform X4
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589961   ⟸   XM_021734286
- Peptide Label: isoform X1
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589970   ⟸   XM_021734295
- Peptide Label: isoform X11
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142666   ⟸   XM_040286732
- Peptide Label: isoform X16
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142665   ⟸   XM_040286731
- Peptide Label: isoform X15
- UniProtKB: I3M4N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000004189   ⟸   ENSSTOT00000004667
RefSeq Acc Id: ENSSTOP00000024136   ⟸   ENSSTOT00000040926
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004575 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004667.3 UniProtKB/TrEMBL
  ENSSTOT00000040926.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
  6.10.250.2180 UniProtKB/TrEMBL
  6.10.250.2500 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF_hand_dom UniProtKB/TrEMBL
  GPHH_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  VDCC_a1su_IQ UniProtKB/TrEMBL
  VDCC_N_a1su UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Cacna1b ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT N-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1B UniProtKB/TrEMBL
Pfam Ca_chan_IQ UniProtKB/TrEMBL
  GPHH UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS CACHANNEL UniProtKB/TrEMBL
  NVDCCALPHA1 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
SMART Ca_chan_IQ UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A287CS75_ICTTR UniProtKB/TrEMBL
  I3M4N4 ENTREZGENE, UniProtKB/TrEMBL