LOC101966992 (cytochrome b-245 heavy chain) - Rat Genome Database

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Gene: LOC101966992 (cytochrome b-245 heavy chain) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101966992 (Ensembl: CYBB)
Name: cytochrome b-245 heavy chain
RGD ID: 12574923
Description: ENCODES a protein that exhibits electron transfer activity (ortholog); superoxide-generating NAD(P)H oxidase activity (ortholog); INVOLVED IN cellular response to cadmium ion (ortholog); cellular response to ethanol (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH autistic disorder (ortholog); brain infarction (ortholog); chronic granulomatous disease (ortholog); FOUND IN dendrite (ortholog); NADPH oxidase complex (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X24,791,011 - 24,835,926 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365024,635,149 - 4,676,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365024,631,750 - 4,676,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101966992
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X24,791,011 - 24,835,926 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365024,635,149 - 4,676,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365024,631,750 - 4,676,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYBB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X37,780,059 - 37,813,461 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX37,780,018 - 37,813,461 (+)EnsemblGRCh38hg38GRCh38
GRCh37X37,639,312 - 37,672,714 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,524,264 - 37,557,658 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X37,395,536 - 37,428,931NCBI
CeleraX41,776,951 - 41,810,391 (+)NCBICelera
Cytogenetic MapXp21.1-p11.4NCBI
HuRefX35,383,460 - 35,418,115 (+)NCBIHuRef
CHM1_1X37,670,409 - 37,703,853 (+)NCBICHM1_1
T2T-CHM13v2.0X37,183,630 - 37,217,034 (+)NCBIT2T-CHM13v2.0
Cybb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X9,301,493 - 9,354,005 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX9,301,491 - 9,354,010 (-)EnsemblGRCm39 Ensembl
GRCm38X9,435,252 - 9,487,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX9,435,252 - 9,487,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X9,012,378 - 9,046,450 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X8,593,665 - 8,626,226 (-)NCBIMGSCv36mm8
CeleraX7,154,874 - 7,188,991 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX4.3NCBI
Cybb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,030,596 - 16,065,065 (-)NCBIGRCr8
mRatBN7.2X13,358,101 - 13,392,570 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX13,359,430 - 13,392,586 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX13,547,712 - 13,579,740 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X17,044,644 - 17,076,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X13,301,229 - 13,333,255 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,578,330 - 14,610,049 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,578,264 - 14,612,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X15,359,405 - 15,391,317 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X25,514,572 - 25,547,181 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X25,568,040 - 25,600,650 (-)NCBI
CeleraX14,033,486 - 14,065,403 (+)NCBICelera
Cytogenetic MapXq12NCBI
LOC102012042
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955587781,388 - 819,912 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955587781,533 - 818,149 (+)NCBIChiLan1.0ChiLan1.0
LOC100982531
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X39,424,548 - 39,465,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X39,432,267 - 39,469,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X30,230,394 - 30,267,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X37,939,744 - 37,976,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX37,939,704 - 37,973,183 (+)Ensemblpanpan1.1panPan2
CYBB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X32,533,365 - 32,568,149 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX32,533,320 - 32,568,217 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX19,880,947 - 19,915,729 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X32,578,634 - 32,613,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX32,578,588 - 32,614,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X32,660,059 - 32,694,839 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X32,623,867 - 32,658,828 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X32,671,823 - 32,706,767 (+)NCBIUU_Cfam_GSD_1.0
GP91-PHOX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX33,643,648 - 33,680,580 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X33,654,656 - 33,678,346 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X37,355,082 - 37,392,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYBB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605638,240,025 - 38,273,771 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101709509
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476217,757,404 - 17,793,467 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476217,759,625 - 17,793,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000024357   ⟹   ENSSTOP00000022599
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365024,635,149 - 4,676,904 (+)Ensembl
RefSeq Acc Id: XM_005323955   ⟹   XP_005324012
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X24,791,011 - 24,835,926 (+)NCBI
SpeTri2.0NW_0049365024,631,750 - 4,676,686 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022599.2
GenBank Protein KAG3271928 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005324012   ⟸   XM_005323955
- UniProtKB: I3NE02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000022599   ⟸   ENSSTOT00000024357
Protein Domains
FAD-binding FR-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019548 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024357.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.80 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro Cyt_b245_heavy_chain UniProtKB/TrEMBL
  FAD-bd_8 UniProtKB/TrEMBL
  FAD-bd_FR_type UniProtKB/TrEMBL
  Fe3_Rdtase_TM_dom UniProtKB/TrEMBL
  Fe_red_NAD-bd_6 UniProtKB/TrEMBL
  FNR_nucleotide-bd UniProtKB/TrEMBL
  Riboflavin_synthase-like_b-brl UniProtKB/TrEMBL
NCBI Gene LOC101966992 ENTREZGENE
PANTHER CYTOCHROME B-245 HEAVY CHAIN UniProtKB/TrEMBL
  NADPH OXIDASE UniProtKB/TrEMBL
Pfam FAD_binding_8 UniProtKB/TrEMBL
  Ferric_reduct UniProtKB/TrEMBL
  NAD_binding_6 UniProtKB/TrEMBL
PRINTS GP91PHOX UniProtKB/TrEMBL
PROSITE FAD_FR UniProtKB/TrEMBL
Superfamily-SCOP SSF52343 UniProtKB/TrEMBL
  SSF63380 UniProtKB/TrEMBL
UniProt I3NE02 ENTREZGENE, UniProtKB/TrEMBL