Cdk2 (cyclin dependent kinase 2) - Rat Genome Database

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Gene: Cdk2 (cyclin dependent kinase 2) Ictidomys tridecemlineatus
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Symbol: Cdk2
Name: cyclin dependent kinase 2
RGD ID: 12572193
Description: ENCODES a protein that exhibits cyclin binding (ortholog); cyclin-dependent protein serine/threonine kinase activity (ortholog); histone kinase activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); cellular response to insulin stimulus (ortholog); DNA damage response (ortholog); PARTICIPATES IN G1/S transition pathway; interleukin-2 signaling pathway; mTOR signaling pathway; ASSOCIATED WITH breast cancer (ortholog); Embryo Loss (ortholog); Endometrial Neoplasms (ortholog); FOUND IN Cajal body (inferred); centrosome (inferred); chromosome, telomeric region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin dependent kinase 2, transcript variant X1; cyclin dependent kinase 2, transcript variant X2; cyclin-dependent kinase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,484,370 - 58,490,389 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646379,842 - 385,877 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646379,849 - 385,648 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,484,370 - 58,490,389 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646379,842 - 385,877 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646379,849 - 385,648 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,966,830 - 55,972,789 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,966,781 - 55,972,789 (+)EnsemblGRCh38hg38GRCh38
GRCh371256,360,614 - 56,366,573 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,646,826 - 54,652,835 (+)NCBINCBI36Build 36hg18NCBI36
Build 341254,646,825 - 54,652,834NCBI
Celera1256,013,264 - 56,019,276 (+)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,399,466 - 53,405,479 (+)NCBIHuRef
CHM1_11256,327,689 - 56,333,679 (+)NCBICHM1_1
T2T-CHM13v2.01255,933,893 - 55,939,852 (+)NCBIT2T-CHM13v2.0
Cdk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,533,807 - 128,540,920 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,533,808 - 128,540,900 (-)EnsemblGRCm39 Ensembl
GRCm3810128,697,938 - 128,705,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,697,939 - 128,705,031 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710128,134,995 - 128,142,107 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,100,888 - 128,107,961 (-)NCBIMGSCv36mm8
Celera10131,090,071 - 131,097,183 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.13NCBI
Cdk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,714,392 - 1,721,964 (-)NCBIGRCr8
mRatBN7.271,129,878 - 1,137,431 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,129,811 - 1,137,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,893,030 - 3,900,519 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,768,702 - 5,776,191 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,065,517 - 6,073,007 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,124,953 - 3,132,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,124,954 - 3,132,457 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.073,097,653 - 3,105,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,000,196 - 2,007,682 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,000,196 - 2,007,682 (-)NCBI
Celera71,000,083 - 1,007,560 (-)NCBICelera
Cytogenetic Map7q11NCBI
Cdk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,555,603 - 3,562,120 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,555,603 - 3,561,063 (+)NCBIChiLan1.0ChiLan1.0
CDK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,356,902 - 38,362,969 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,353,674 - 38,359,695 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,940,225 - 32,946,236 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,189,934 - 33,195,945 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,189,934 - 33,195,945 (-)Ensemblpanpan1.1panPan2
CDK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110300,863 - 306,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10300,903 - 305,438 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10362,779 - 368,479 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010307,657 - 313,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10307,694 - 312,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110285,465 - 291,170 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010528,243 - 533,942 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010652,514 - 658,220 (+)NCBIUU_Cfam_GSD_1.0
CDK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,365,764 - 21,372,168 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,365,723 - 21,372,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2522,941,174 - 22,947,591 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,905,085 - 51,910,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1151,905,115 - 51,909,907 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037194,076,082 - 194,082,105 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480212,076,443 - 12,082,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480212,076,443 - 12,082,608 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000000295   ⟹   ENSSTOP00000000264
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936646379,842 - 385,877 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034134   ⟹   ENSSTOP00000028881
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936646379,842 - 385,647 (+)Ensembl
RefSeq Acc Id: XM_005335606   ⟹   XP_005335663
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,484,370 - 58,490,389 (-)NCBI
SpeTri2.0NW_004936646379,849 - 385,648 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005335607   ⟹   XP_005335664
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,484,370 - 58,490,388 (-)NCBI
SpeTri2.0NW_004936646379,849 - 385,648 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005335663 (Get FASTA)   NCBI Sequence Viewer  
  XP_005335664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000264.2
  ENSSTOP00000028881.1
GenBank Protein KAG3291661 (Get FASTA)   NCBI Sequence Viewer  
  KAG3291662 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005335663   ⟸   XM_005335606
- Peptide Label: isoform X1
- UniProtKB: A0A287D5T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005335664   ⟸   XM_005335607
- Peptide Label: isoform X2
- UniProtKB: I3LWC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000264   ⟸   ENSSTOT00000000295
RefSeq Acc Id: ENSSTOP00000028881   ⟸   ENSSTOT00000034134
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000298 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000295.3 UniProtKB/TrEMBL
  ENSSTOT00000034134.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Cdk2 ENTREZGENE
PANTHER CELL DIVISION PROTEIN KINASE UniProtKB/TrEMBL
  CYCLIN-DEPENDENT KINASE 2 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A287D5T7 ENTREZGENE, UniProtKB/TrEMBL
  I3LWC0 ENTREZGENE, UniProtKB/TrEMBL