Elmod3 (ELMO domain containing 3) - Rat Genome Database

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Gene: Elmod3 (ELMO domain containing 3) Ictidomys tridecemlineatus
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Symbol: Elmod3
Name: ELMO domain containing 3
RGD ID: 12569447
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN auditory receptor cell development (ortholog); cilium assembly (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH Autosomal Dominant Nonsyndromic Deafness 81 (ortholog); autosomal recessive nonsyndromic deafness 88 (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ELMO domain containing 3, transcript variant X1; ELMO domain containing 3, transcript variant X2; ELMO domain containing 3, transcript variant X3; ELMO domain containing 3, transcript variant X4; ELMO domain containing 3, transcript variant X5; ELMO domain containing 3, transcript variant X6; ELMO domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,031,658 - 79,053,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,805,795 - 1,825,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,805,141 - 1,827,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cilium  (ISO)
Golgi apparatus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Elmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,031,658 - 79,053,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,805,795 - 1,825,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,805,141 - 1,827,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,354,769 - 85,391,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,354,394 - 85,391,752 (+)EnsemblGRCh38hg38GRCh38
GRCh37285,581,892 - 85,618,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,435,447 - 85,472,382 (+)NCBINCBI36Build 36hg18NCBI36
Build 34285,493,593 - 85,530,527NCBI
Celera285,409,846 - 85,447,061 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,478,667 - 85,515,684 (+)NCBIHuRef
CHM1_1285,511,554 - 85,548,621 (+)NCBICHM1_1
T2T-CHM13v2.0285,356,760 - 85,393,759 (+)NCBIT2T-CHM13v2.0
Elmod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,542,905 - 72,575,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,542,905 - 72,575,396 (-)EnsemblGRCm39 Ensembl
GRCm38672,565,922 - 72,598,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,565,922 - 72,598,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,515,921 - 72,548,336 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,495,436 - 72,527,851 (-)NCBIMGSCv36mm8
Celera674,664,110 - 74,696,606 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Elmod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,172,819 - 106,211,286 (-)NCBIGRCr8
mRatBN7.24104,614,665 - 104,653,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,614,676 - 104,653,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,993,517 - 110,032,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,768,639 - 105,807,263 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,382,429 - 104,420,830 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,422,256 - 100,465,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,422,252 - 100,465,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,192,607 - 165,237,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,866,419 - 106,099,850 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,110,901 - 106,344,331 (-)NCBI
Celera493,768,136 - 93,805,963 (-)NCBICelera
Cytogenetic Map4q32NCBI
Elmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,083,085 - 2,106,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,082,480 - 2,107,599 (-)NCBIChiLan1.0ChiLan1.0
ELMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,991,659 - 41,028,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,994,392 - 41,031,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,407,326 - 85,444,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A86,958,874 - 86,994,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,958,957 - 86,994,897 (+)Ensemblpanpan1.1panPan2
ELMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,642,101 - 39,668,079 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,643,676 - 39,665,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,313,501 - 39,339,626 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,451,641 - 40,477,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1740,446,329 - 40,477,528 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,518,851 - 39,544,957 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,590,458 - 39,616,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,990,386 - 40,016,502 (-)NCBIUU_Cfam_GSD_1.0
ELMOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,369,820 - 59,401,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,369,816 - 59,401,193 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,323,190 - 62,354,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,765,160 - 21,803,774 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604590,635,934 - 90,701,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,749,658 - 17,774,891 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,749,004 - 17,774,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000009422   ⟹   ENSSTOP00000008451
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367121,805,795 - 1,825,676 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041957   ⟹   ENSSTOP00000026600
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367121,806,364 - 1,825,676 (-)Ensembl
RefSeq Acc Id: XM_005338458   ⟹   XP_005338515
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,838 - 79,053,307 (+)NCBI
SpeTri2.0NW_0049367121,805,141 - 1,826,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040271597   ⟹   XP_040127531
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,832 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271598   ⟹   XP_040127532
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,832 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271599   ⟹   XP_040127533
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,658 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271600   ⟹   XP_040127534
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,832 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271601   ⟹   XP_040127535
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,831 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271602   ⟹   XP_040127536
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,830 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271603   ⟹   XP_040127537
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,835 - 79,053,307 (+)NCBI
RefSeq Acc Id: XM_040271604   ⟹   XP_040127538
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,031,835 - 79,053,307 (+)NCBI
RefSeq Acc Id: XP_005338515   ⟸   XM_005338458
- Peptide Label: isoform X6
- UniProtKB: I3MDI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040127533   ⟸   XM_040271599
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040127536   ⟸   XM_040271602
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040127535   ⟸   XM_040271601
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040127531   ⟸   XM_040271597
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040127532   ⟸   XM_040271598
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040127534   ⟸   XM_040271600
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040127537   ⟸   XM_040271603
- Peptide Label: isoform X4
- UniProtKB: I3MDI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040127538   ⟸   XM_040271604
- Peptide Label: isoform X5
- UniProtKB: I3MDI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000008451   ⟸   ENSSTOT00000009422
RefSeq Acc Id: ENSSTOP00000026600   ⟸   ENSSTOT00000041957
Protein Domains
ELMO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009420 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009422.3 UniProtKB/TrEMBL
  ENSSTOT00000041957.1 UniProtKB/TrEMBL
InterPro ELMO_dom UniProtKB/TrEMBL
NCBI Gene Elmod3 ENTREZGENE
PANTHER ENGULFMENT AND CELL MOTILITY UniProtKB/TrEMBL
  PTHR12771:SF2 UniProtKB/TrEMBL
Pfam ELMO_CED12 UniProtKB/TrEMBL
PROSITE ELMO UniProtKB/TrEMBL
UniProt A0A287CZ38_ICTTR UniProtKB/TrEMBL
  I3MDI7 ENTREZGENE, UniProtKB/TrEMBL