Cpt1b (carnitine palmitoyltransferase 1B) - Rat Genome Database

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Gene: Cpt1b (carnitine palmitoyltransferase 1B) Ictidomys tridecemlineatus
Analyze
Symbol: Cpt1b
Name: carnitine palmitoyltransferase 1B
RGD ID: 12561604
Description: ENCODES a protein that exhibits carnitine O-palmitoyltransferase activity (ortholog); INVOLVED IN long-chain fatty acid transport (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; forkhead class A signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Cardiomegaly (ortholog); chromosome 22q13 duplication syndrome (ortholog); FOUND IN membrane (inferred); mitochondrial outer membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carnitine O-palmitoyltransferase 1, muscle isoform; carnitine palmitoyltransferase 1B, transcript variant X1; carnitine palmitoyltransferase 1B, transcript variant X2; carnitine palmitoyltransferase 1B, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945246,924 - 255,324 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629247,005 - 255,537 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629246,876 - 255,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cpt1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945246,924 - 255,324 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629247,005 - 255,537 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629246,876 - 255,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,568,861 - 50,578,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,568,861 - 50,578,465 (-)EnsemblGRCh38hg38GRCh38
GRCh372251,007,290 - 51,017,041 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,354,156 - 49,363,862 (-)NCBINCBI36Build 36hg18NCBI36
Build 342249,297,433 - 49,311,538NCBI
Celera2234,883,323 - 34,893,129 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,898,289 - 33,908,095 (-)NCBIHuRef
CHM1_12250,966,023 - 50,975,829 (-)NCBICHM1_1
T2T-CHM13v2.02251,079,388 - 51,089,140 (-)NCBIT2T-CHM13v2.0
Cpt1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,300,608 - 89,310,065 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,300,608 - 89,310,066 (-)EnsemblGRCm39 Ensembl
GRCm381589,416,405 - 89,425,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,416,405 - 89,425,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,246,836 - 89,256,293 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,244,172 - 89,253,114 (-)NCBIMGSCv36mm8
Celera1591,545,496 - 91,554,925 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.89NCBI
Cpt1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,370,974 - 122,380,473 (-)NCBIGRCr8
mRatBN7.27120,491,354 - 120,500,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,491,354 - 120,500,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,243,327 - 122,252,370 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,469,475 - 124,478,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,431,532 - 124,440,579 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,395,211 - 130,404,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,395,194 - 130,405,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,080,032 - 130,089,314 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,737,129 - 127,746,179 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,771,358 - 127,780,409NCBI
Celera7116,963,968 - 116,973,018 (-)NCBICelera
Cytogenetic Map7q34NCBI
Cpt1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,578,355 - 33,588,674 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,578,734 - 33,588,055 (-)NCBIChiLan1.0ChiLan1.0
CPT1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,488,826 - 60,499,113 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,179,408 - 63,189,695 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,815,073 - 30,825,341 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,926,405 - 49,936,633 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,926,893 - 49,935,420 (-)Ensemblpanpan1.1panPan2
CPT1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,737,106 - 16,744,626 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,737,289 - 16,744,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,714,785 - 16,722,260 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,463,472 - 17,470,978 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,463,343 - 17,470,976 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,187,860 - 17,195,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,510,879 - 17,518,347 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,643,053 - 17,650,532 (+)NCBIUU_Cfam_GSD_1.0
CPT1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5155,643 - 163,531 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15155,552 - 163,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CPT1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,044,272 - 33,055,197 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1933,043,916 - 33,054,247 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,286,953 - 92,297,911 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpt1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752190,462 - 201,880 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752191,539 - 200,483 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000014199   ⟹   ENSSTOP00000012720
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936629247,005 - 255,537 (+)Ensembl
RefSeq Acc Id: XM_005334986   ⟹   XP_005335043
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945246,952 - 255,324 (+)NCBI
SpeTri2.0NW_004936629247,160 - 255,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005334987   ⟹   XP_005335044
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945246,952 - 255,324 (+)NCBI
SpeTri2.0NW_004936629247,001 - 255,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005334988   ⟹   XP_005335045
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945246,924 - 255,324 (+)NCBI
SpeTri2.0NW_004936629246,876 - 255,324 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005335043 (Get FASTA)   NCBI Sequence Viewer  
  XP_005335044 (Get FASTA)   NCBI Sequence Viewer  
  XP_005335045 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012720.3
GenBank Protein KAG3290651 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290652 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290653 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005335045   ⟸   XM_005334988
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005335044   ⟸   XM_005334987
- Peptide Label: isoform X2
- UniProtKB: I3MMG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005335043   ⟸   XM_005334986
- Peptide Label: isoform X2
- UniProtKB: I3MMG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012720   ⟸   ENSSTOT00000014199

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014192 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014199.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.559.10 UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/TrEMBL
  6.10.250.1760 UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/TrEMBL
  CPT_N UniProtKB/TrEMBL
NCBI Gene Cpt1b ENTREZGENE
PANTHER CARNITINE O-PALMITOYLTRANSFERASE 1, MUSCLE ISOFORM UniProtKB/TrEMBL
  PTHR22589 UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/TrEMBL
  CPT_N UniProtKB/TrEMBL
PROSITE ACYLTRANSF_C_1 UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/TrEMBL
Superfamily-SCOP CoA-dependent acyltransferases UniProtKB/TrEMBL
UniProt I3MMG4 ENTREZGENE, UniProtKB/TrEMBL