Nr2f2 (nuclear receptor subfamily 2 group F member 2) - Rat Genome Database

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Gene: Nr2f2 (nuclear receptor subfamily 2 group F member 2) Ictidomys tridecemlineatus
Analyze
Symbol: Nr2f2
Name: nuclear receptor subfamily 2 group F member 2
RGD ID: 12561235
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); blood vessel morphogenesis (ortholog); fertilization (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); 46,XX sex reversal 5 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COUP transcription factor 2; nuclear receptor subfamily 2 group F member 2, transcript variant X1; nuclear receptor subfamily 2 group F member 2, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640139,433,402 - 139,446,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364836,886,153 - 6,900,997 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364836,886,447 - 6,900,986 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nr2f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640139,433,402 - 139,446,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364836,886,153 - 6,900,997 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364836,886,447 - 6,900,986 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR2F2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381596,326,046 - 96,340,263 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1596,325,938 - 96,340,263 (+)EnsemblGRCh38hg38GRCh38
GRCh371596,869,275 - 96,883,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361594,674,950 - 94,683,048 (+)NCBINCBI36Build 36hg18NCBI36
Build 341594,674,949 - 94,683,045NCBI
Celera1573,285,358 - 73,299,693 (+)NCBICelera
Cytogenetic Map15q26.2NCBI
HuRef1572,999,792 - 73,013,983 (+)NCBIHuRef
CHM1_11596,711,246 - 96,725,580 (+)NCBICHM1_1
T2T-CHM13v2.01594,090,629 - 94,104,848 (+)NCBIT2T-CHM13v2.0
Nr2f2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39770,001,694 - 70,016,494 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl770,001,692 - 70,016,483 (-)EnsemblGRCm39 Ensembl
GRCm38770,351,946 - 70,366,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl770,351,944 - 70,366,735 (-)EnsemblGRCm38mm10GRCm38
MGSCv37777,496,836 - 77,511,632 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36770,226,952 - 70,240,235 (-)NCBIMGSCv36mm8
Celera767,807,423 - 67,836,911 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map738.66NCBI
Nr2f2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81133,419,161 - 133,434,290 (-)NCBIGRCr8
mRatBN7.21124,008,282 - 124,022,521 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1124,009,181 - 124,022,031 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1132,007,025 - 132,012,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01139,177,092 - 139,183,046 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,989,976 - 131,995,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,447,671 - 131,465,749 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,448,447 - 131,460,473 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01132,486,697 - 132,499,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41125,280,974 - 125,286,929 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11125,359,316 - 125,365,272 (-)NCBI
Celera1116,179,533 - 116,185,445 (-)NCBICelera
Cytogenetic Map1q31NCBI
Nr2f2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541624,141,888 - 24,168,585 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541624,148,052 - 24,154,406 (+)NCBIChiLan1.0ChiLan1.0
NR2F2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21685,870,526 - 85,903,632 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11589,569,489 - 89,582,674 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01575,008,879 - 75,021,981 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11594,196,494 - 94,210,599 (+)NCBIpanpan1.1PanPan1.1panPan2
NR2F2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1344,135,143 - 44,148,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl344,136,463 - 44,148,524 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha346,838,728 - 46,852,294 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0344,548,234 - 44,561,807 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl344,475,116 - 44,561,446 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1344,070,866 - 44,084,429 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0344,300,713 - 44,314,268 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0344,625,819 - 44,639,411 (-)NCBIUU_Cfam_GSD_1.0
NR2F2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl783,076,124 - 83,090,535 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1783,076,119 - 83,090,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2788,960,806 - 88,972,751 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR2F2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12914,889,526 - 14,901,848 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2914,891,737 - 14,903,813 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605931,706,856 - 31,720,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr2f2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247687,701,674 - 7,728,408 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247687,713,771 - 7,728,102 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027746   ⟹   ENSSTOP00000020720
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364836,886,153 - 6,894,905 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037736   ⟹   ENSSTOP00000026258
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364836,886,153 - 6,900,997 (-)Ensembl
RefSeq Acc Id: XM_005320097   ⟹   XP_005320154
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640139,439,584 - 139,446,616 (+)NCBI
SpeTri2.0NW_0049364836,886,447 - 6,894,905 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005320100   ⟹   XP_005320157
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640139,433,402 - 139,446,616 (+)NCBI
SpeTri2.0NW_0049364836,886,447 - 6,900,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275914   ⟹   XP_040131848
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640139,440,387 - 139,446,616 (+)NCBI
RefSeq Acc Id: XM_040275915   ⟹   XP_040131849
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640139,441,055 - 139,446,616 (+)NCBI
RefSeq Acc Id: XM_040275916   ⟹   XP_040131850
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640139,441,481 - 139,446,616 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005320157   ⟸   XM_005320100
- Peptide Label: isoform X2
- UniProtKB: A0A287CYA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005320154   ⟸   XM_005320097
- Peptide Label: isoform X1
- UniProtKB: I3N8M4 (UniProtKB/TrEMBL),   I3MPN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131848   ⟸   XM_040275914
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040131849   ⟸   XM_040275915
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040131850   ⟸   XM_040275916
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000026258   ⟸   ENSSTOT00000037736
RefSeq Acc Id: ENSSTOP00000020720   ⟸   ENSSTOT00000027746
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025965 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027746.2 UniProtKB/TrEMBL
  ENSSTOT00000037736.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene Nr2f2 ENTREZGENE
PANTHER COUP TRANSCRIPTION FACTOR 2 UniProtKB/TrEMBL
  NUCLEAR HORMONE RECEPTOR UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS COUPTNFACTOR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A287CYA9 ENTREZGENE, UniProtKB/TrEMBL
  I3MPN8 ENTREZGENE
  I3N8M4 ENTREZGENE, UniProtKB/TrEMBL