Ctsc (cathepsin C) - Rat Genome Database

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Pathways
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Gene: Ctsc (cathepsin C) Ictidomys tridecemlineatus
Analyze
Symbol: Ctsc
Name: cathepsin C
RGD ID: 12556069
Description: ENCODES a protein that exhibits chloride ion binding (ortholog); cysteine-type peptidase activity (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of myelination (ortholog); positive regulation of apoptotic signaling pathway (ortholog); positive regulation of microglial cell activation (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); allergic contact dermatitis (ortholog); brain ischemia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dipeptidyl peptidase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494774,101,638 - 74,140,957 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367361,201,343 - 1,240,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ctsc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494774,101,638 - 74,140,957 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367361,201,343 - 1,240,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTSC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381188,293,592 - 88,337,736 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1188,265,069 - 88,359,684 (-)EnsemblGRCh38hg38GRCh38
GRCh371188,026,760 - 88,070,904 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361187,666,408 - 87,710,586 (-)NCBINCBI36Build 36hg18NCBI36
Build 341187,698,901 - 87,710,586NCBI
Celera1186,561,173 - 86,605,363 (+)NCBICelera
Cytogenetic Map11q14.2NCBI
HuRef1184,265,651 - 84,309,838 (-)NCBIHuRef
CHM1_11187,909,527 - 87,953,700 (-)NCBICHM1_1
T2T-CHM13v2.01188,212,614 - 88,256,755 (-)NCBIT2T-CHM13v2.0
Ctsc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39787,927,233 - 87,960,083 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl787,927,293 - 87,960,096 (+)EnsemblGRCm39 Ensembl
GRCm38788,278,024 - 88,315,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl788,278,085 - 88,310,888 (+)EnsemblGRCm38mm10GRCm38
MGSCv37795,426,603 - 95,459,385 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36788,153,327 - 88,186,080 (+)NCBIMGSCv36mm8
Celera785,627,464 - 85,661,039 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map749.11NCBI
Ctsc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81151,440,860 - 151,472,430 (+)NCBIGRCr8
mRatBN7.21142,028,386 - 142,059,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,028,392 - 142,060,387 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1149,985,662 - 150,017,065 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,162,100 - 157,193,503 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01150,036,027 - 150,067,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01151,918,514 - 151,949,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1151,918,571 - 151,949,983 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01158,231,534 - 158,263,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,629,802 - 144,661,183 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11144,708,207 - 144,739,589 (+)NCBI
Celera1140,327,884 - 140,359,275 (+)NCBICelera
Cytogenetic Map1q32NCBI
Ctsc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554145,062,355 - 5,092,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554145,062,355 - 5,092,631 (+)NCBIChiLan1.0ChiLan1.0
CTSC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2989,168,583 - 89,213,037 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,209,107 - 90,254,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,299,827 - 83,345,383 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,890,010 - 86,933,847 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,890,010 - 86,933,847 (-)Ensemblpanpan1.1panPan2
CTSC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12111,659,296 - 11,692,957 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2111,659,292 - 11,692,816 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2111,517,038 - 11,552,914 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02111,838,431 - 11,874,146 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2111,838,429 - 11,876,897 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12111,627,285 - 11,662,982 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02111,697,940 - 11,733,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02111,752,070 - 11,787,980 (+)NCBIUU_Cfam_GSD_1.0
CTSC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl921,722,036 - 21,761,516 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1921,726,628 - 21,761,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2924,081,771 - 24,116,596 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTSC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1179,426,556 - 79,468,464 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl179,426,549 - 79,468,340 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604346,251,030 - 46,291,563 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctsc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248451,783,918 - 1,815,981 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248451,783,807 - 1,816,471 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040283758   ⟹   XP_040139692
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494774,101,638 - 74,140,957 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040139692 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3286318 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040139692   ⟸   XM_040283758


Additional Information

Database Acc Id Source(s)
NCBI Gene Ctsc ENTREZGENE