Kcna3 (potassium voltage-gated channel subfamily A member 3) - Rat Genome Database

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Gene: Kcna3 (potassium voltage-gated channel subfamily A member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Kcna3
Name: potassium voltage-gated channel subfamily A member 3
RGD ID: 12550874
Description: ENCODES a protein that exhibits delayed rectifier potassium channel activity (ortholog); outward rectifier potassium channel activity (ortholog); INVOLVED IN corpus callosum development (ortholog); optic nerve development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN calyx of Held (ortholog); glutamatergic synapse (ortholog); membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel, shaker-related subfamily, member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,028,223 - 18,047,417 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367042,084,436 - 2,085,923 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367042,083,037 - 2,085,917 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcna3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,028,223 - 18,047,417 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367042,084,436 - 2,085,923 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367042,083,037 - 2,085,917 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,653,560 - 110,674,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,653,560 - 110,674,940 (-)EnsemblGRCh38hg38GRCh38
GRCh371111,196,182 - 111,217,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,015,833 - 111,019,178 (-)NCBINCBI36Build 36hg18NCBI36
Build 341110,926,351 - 110,929,697NCBI
Celera1109,461,411 - 109,464,756 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1109,085,699 - 109,089,044 (-)NCBIHuRef
CHM1_11111,329,439 - 111,332,784 (-)NCBICHM1_1
T2T-CHM13v2.01110,668,304 - 110,689,683 (-)NCBIT2T-CHM13v2.0
Kcna3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393106,943,486 - 106,947,223 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3106,943,485 - 106,945,386 (+)EnsemblGRCm39 Ensembl
GRCm383107,036,162 - 107,038,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,036,169 - 107,038,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv373106,839,080 - 106,841,047 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,164,479 - 107,166,065 (+)NCBIMGSCv36mm8
Celera3109,365,430 - 109,367,397 (+)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.59NCBI
Kcna3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,320,324 - 197,322,277 (+)NCBIGRCr8
mRatBN7.22194,632,106 - 194,634,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2194,632,196 - 194,650,138 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,264,409 - 202,265,986 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,158,435 - 200,160,012 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02194,975,390 - 194,976,967 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02209,766,767 - 209,768,344 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2209,766,512 - 209,769,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,233,084 - 229,234,661 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42202,472,638 - 202,474,215 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12202,435,391 - 202,436,969 (+)NCBI
Celera2187,293,280 - 187,294,857 (+)NCBICelera
Cytogenetic Map2q34NCBI
Kcna3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543514,147,454 - 14,148,926 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543514,132,877 - 14,148,911 (-)NCBIChiLan1.0ChiLan1.0
KCNA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,366,047 - 116,384,339 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11115,513,619 - 115,531,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01113,304,340 - 113,323,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,021,508 - 127,042,481 (+)NCBIpanpan1.1PanPan1.1panPan2
KCNA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,343,613 - 41,363,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,120,679 - 44,140,399 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0641,675,464 - 41,695,170 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl641,675,383 - 41,677,026 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1641,395,369 - 41,415,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,366,130 - 41,385,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0641,801,395 - 41,821,138 (+)NCBIUU_Cfam_GSD_1.0
KCNA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4109,495,350 - 109,497,116 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14109,495,220 - 109,498,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24119,860,978 - 119,877,340 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12022,869,388 - 22,885,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2022,870,880 - 22,872,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603835,569,291 - 35,590,505 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcna3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247726,364,325 - 6,376,208 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247726,360,169 - 6,376,281 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000022621   ⟹   ENSSTOP00000021907
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367042,084,436 - 2,085,923 (-)Ensembl
RefSeq Acc Id: XM_005338124   ⟹   XP_005338181
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505818,028,223 - 18,047,417 (+)NCBI
SpeTri2.0NW_0049367042,083,037 - 2,085,917 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338181 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021907.1
GenBank Protein KAG3281287 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005338181   ⟸   XM_005338124
- UniProtKB: I3NC10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000021907   ⟸   ENSSTOT00000022621
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026278 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022621.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv1 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv1.3 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Kcna3 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY A MEMBER 3 UniProtKB/TrEMBL
  PTHR11537 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV13CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
  SHAKERCHANEL UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt I3NC10 ENTREZGENE, UniProtKB/TrEMBL