Parp2 (poly(ADP-ribose) polymerase 2) - Rat Genome Database

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Gene: Parp2 (poly(ADP-ribose) polymerase 2) Ictidomys tridecemlineatus
Analyze
Symbol: Parp2
Name: poly(ADP-ribose) polymerase 2
RGD ID: 12548053
Description: ENCODES a protein that exhibits chromatin binding (inferred); damaged DNA binding (inferred); glycosyltransferase activity (inferred); INVOLVED IN base-excision repair (ortholog); extrinsic apoptotic signaling pathway (ortholog); hippocampal neuron apoptotic process (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Cardiomegaly (ortholog); genetic disease (ortholog); lipodystrophy (ortholog); FOUND IN site of DNA damage (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: poly [ADP-ribose] polymerase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,573,779 - 77,583,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877554,473 - 564,903 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936877554,969 - 564,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Parp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,573,779 - 77,583,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877554,473 - 564,903 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936877554,969 - 564,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,343,635 - 20,357,904 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,343,615 - 20,357,904 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,811,794 - 20,826,063 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,881,613 - 19,895,903 (+)NCBINCBI36Build 36hg18NCBI36
Celera14672,919 - 687,220 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14933,616 - 947,915 (+)NCBIHuRef
CHM1_11420,813,199 - 20,827,472 (+)NCBICHM1_1
T2T-CHM13v2.01414,540,530 - 14,554,811 (+)NCBIT2T-CHM13v2.0
Parp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,045,347 - 51,058,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,045,298 - 51,058,758 (+)EnsemblGRCm39 Ensembl
GRCm381450,807,897 - 50,821,301 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,807,841 - 50,821,301 (+)EnsemblGRCm38mm10GRCm38
MGSCv371451,427,621 - 51,440,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,729,897 - 49,743,251 (+)NCBIMGSCv36mm8
Celera1447,099,033 - 47,112,197 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.25NCBI
Parp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,494,722 - 26,517,893 (+)NCBIGRCr8
mRatBN7.21524,034,069 - 24,044,340 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,034,106 - 24,044,338 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,805,300 - 26,815,532 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,764,036 - 27,774,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,013,838 - 26,024,070 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,739,416 - 27,749,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,739,251 - 27,749,648 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,571,841 - 31,582,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,790,296 - 26,801,086 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11526,806,027 - 26,816,785 (+)NCBI
Celera1524,353,597 - 24,363,829 (+)NCBICelera
Cytogenetic Map15p14NCBI
Parp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,140,460 - 1,151,491 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,138,976 - 1,152,293 (+)NCBIChiLan1.0ChiLan1.0
PARP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,850,677 - 21,864,950 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,067,164 - 21,081,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,215,727 - 1,230,006 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,268,986 - 19,282,960 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,269,046 - 19,282,853 (+)Ensemblpanpan1.1panPan2
PARP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,705,966 - 17,716,743 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,705,975 - 17,716,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,191,050 - 18,201,770 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,964,896 - 17,975,837 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1517,964,862 - 17,975,138 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,647,938 - 17,657,915 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,702,653 - 17,713,344 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,831,425 - 17,842,255 (+)NCBIUU_Cfam_GSD_1.0
PARP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,535,076 - 78,551,375 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,535,072 - 78,551,393 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,563,415 - 83,579,720 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PARP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12920,862,787 - 20,877,752 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2920,863,380 - 20,877,644 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605925,544,206 - 25,558,652 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Parp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,313,217 - 4,325,968 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,312,243 - 4,326,058 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000027535   ⟹   ENSSTOP00000018175
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936877554,473 - 564,903 (+)Ensembl
RefSeq Acc Id: XM_005341401   ⟹   XP_005341458
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864077,573,779 - 77,583,748 (+)NCBI
SpeTri2.0NW_004936877554,969 - 564,905 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018175.2
GenBank Protein KAG3261474 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341458   ⟸   XM_005341401
- UniProtKB: I3N1C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018175   ⟸   ENSSTOT00000027535
Protein Domains
PARP alpha-helical   PARP catalytic   WGR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028763 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027535.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.142.10 UniProtKB/TrEMBL
  3.90.228.10 UniProtKB/TrEMBL
  WGR domain UniProtKB/TrEMBL
InterPro Poly(ADP-ribose)pol_cat_dom UniProtKB/TrEMBL
  Poly(ADP-ribose)pol_reg_dom UniProtKB/TrEMBL
  Poly(ADP-ribose)pol_reg_dom_sf UniProtKB/TrEMBL
  WGR_dom_sf UniProtKB/TrEMBL
  WGR_domain UniProtKB/TrEMBL
NCBI Gene Parp2 ENTREZGENE
PANTHER DNA LIGASE UniProtKB/TrEMBL
  POLY [ADP-RIBOSE] POLYMERASE 2 UniProtKB/TrEMBL
Pfam PARP UniProtKB/TrEMBL
  PARP_reg UniProtKB/TrEMBL
  WGR UniProtKB/TrEMBL
PROSITE PARP_ALPHA_HD UniProtKB/TrEMBL
  PARP_CATALYTIC UniProtKB/TrEMBL
  WGR UniProtKB/TrEMBL
SMART WGR UniProtKB/TrEMBL
Superfamily-SCOP ADP-ribosylation UniProtKB/TrEMBL
  SSF142921 UniProtKB/TrEMBL
  SSF47587 UniProtKB/TrEMBL
UniProt I3N1C9 ENTREZGENE, UniProtKB/TrEMBL