Spata13 (spermatogenesis associated 13) - Rat Genome Database

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Gene: Spata13 (spermatogenesis associated 13) Ictidomys tridecemlineatus
Analyze
Symbol: Spata13
Name: spermatogenesis associated 13
RGD ID: 12512755
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell migration (ortholog); filopodium assembly (ortholog); lamellipodium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); filopodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis associated 13, transcript variant X1; spermatogenesis associated 13, transcript variant X2; spermatogenesis-associated protein 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,635,240 - 116,957,681 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366881,433,231 - 1,569,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Spata13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,635,240 - 116,957,681 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366881,433,231 - 1,569,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381323,979,802 - 24,307,069 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1323,979,805 - 24,307,074 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1323,979,810 - 24,035,027 (+)EnsemblGRCh38hg38GRCh38
GRCh371324,553,941 - 24,881,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361323,632,887 - 23,776,048 (+)NCBINCBI36Build 36hg18NCBI36
Build 341323,632,886 - 23,776,048NCBI
Celera135,797,087 - 5,943,877 (+)NCBICelera
Cytogenetic Map13q12.12NCBI
HuRef135,546,585 - 5,692,908 (+)NCBIHuRef
CHM1_11324,702,689 - 24,849,248 (+)NCBICHM1_1
T2T-CHM13v2.01323,186,689 - 23,514,163 (+)NCBIT2T-CHM13v2.0
Spata13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,722,617 - 61,002,005 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,871,450 - 61,002,005 (+)EnsemblGRCm39 Ensembl
GRCm381460,485,168 - 60,764,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,634,001 - 60,764,556 (+)EnsemblGRCm38mm10GRCm38
MGSCv371461,253,566 - 61,383,393 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,588,150 - 59,718,666 (+)NCBIMGSCv36mm8
Celera1458,411,392 - 58,543,017 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.77NCBI
Spata13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,954,585 - 39,083,752 (+)NCBIGRCr8
mRatBN7.21534,778,479 - 34,907,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,778,473 - 34,905,114 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1536,639,905 - 36,765,712 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,790,530 - 37,916,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,239,655 - 36,365,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,937,652 - 41,066,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,937,708 - 41,066,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01544,749,770 - 44,878,760 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41539,722,469 - 39,849,214 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11539,806,342 - 39,864,914 (+)NCBI
Celera1534,478,795 - 34,605,121 (+)NCBICelera
Cytogenetic Map15p12NCBI
Spata13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554974,224,374 - 4,307,335 (-)NCBIChiLan1.0ChiLan1.0
SPATA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21423,602,119 - 23,930,638 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11314,711,983 - 15,039,595 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,298,466 - 5,626,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11323,772,869 - 23,921,025 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1323,837,412 - 23,921,025 (+)Ensemblpanpan1.1panPan2
SPATA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,389,174 - 14,732,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,667,527 - 14,811,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02514,720,317 - 14,864,381 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12514,665,576 - 14,745,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,686,844 - 14,748,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,652,735 - 14,796,901 (+)NCBIUU_Cfam_GSD_1.0
SPATA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1112,806,674 - 3,161,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,160,029 - 2,281,822 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.133,767,078 - 4,085,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl33,932,482 - 4,085,375 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,409,981 - 40,742,603 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021734734   ⟹   XP_021590409
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945116,924,821 - 116,957,681 (+)NCBI
SpeTri2.0NW_0049366881,537,062 - 1,569,954 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040281322   ⟹   XP_040137256
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945116,635,240 - 116,957,681 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021590409 (Get FASTA)   NCBI Sequence Viewer  
  XP_040137256 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010158.3
  ENSSTOP00000018125.2
GenBank Protein KAG3292783 (Get FASTA)   NCBI Sequence Viewer  
  KAG3292784 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021590409   ⟸   XM_021734734
- Peptide Label: isoform X2
- UniProtKB: I3N179 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040137256   ⟸   XM_040281322
- Peptide Label: isoform X1
Protein Domains
DH   PH   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011324 UniProtKB/TrEMBL
  ENSSTOG00000025585 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011322.3 UniProtKB/TrEMBL
  ENSSTOT00000026178.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  GDS_CDC24_CS UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Spata13 ENTREZGENE
PANTHER RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 UniProtKB/TrEMBL
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9 UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PROSITE DH_1 UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt I3MH37_ICTTR UniProtKB/TrEMBL
  I3N179 ENTREZGENE, UniProtKB/TrEMBL