Pla2g6 (phospholipase A2 group VI) - Rat Genome Database

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Gene: Pla2g6 (phospholipase A2 group VI) Ictidomys tridecemlineatus
Analyze
Symbol: Pla2g6
Name: phospholipase A2 group VI
RGD ID: 12511688
Description: ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); calcium-independent phospholipase A2 activity (ortholog); protein kinase binding (ortholog); INVOLVED IN maternal process involved in female pregnancy (ortholog); memory (ortholog); negative regulation of synaptic transmission, glutamatergic (ortholog); PARTICIPATES IN angiotensin II signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autistic disorder (ortholog); cerebellar hypoplasia (ortholog); FOUND IN extracellular space (inferred); microtubule cytoskeleton (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 85/88 kDa calcium-independent phospholipase A2; phospholipase A2 group VI, transcript variant X1; phospholipase A2 group VI, transcript variant X10; phospholipase A2 group VI, transcript variant X11; phospholipase A2 group VI, transcript variant X2; phospholipase A2 group VI, transcript variant X3; phospholipase A2 group VI, transcript variant X4; phospholipase A2 group VI, transcript variant X5; phospholipase A2 group VI, transcript variant X6; phospholipase A2 group VI, transcript variant X7; phospholipase A2 group VI, transcript variant X8; phospholipase A2 group VI, transcript variant X9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,001,353 - 10,050,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,011,772 - 3,060,986 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,011,752 - 3,060,962 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pla2g6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,001,353 - 10,050,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,011,772 - 3,060,986 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,011,752 - 3,060,962 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,111,495 - 38,181,830 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,111,495 - 38,214,778 (-)EnsemblGRCh38hg38GRCh38
GRCh372238,507,502 - 38,577,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,837,448 - 36,907,707 (-)NCBINCBI36Build 36hg18NCBI36
Build 342236,832,002 - 36,902,261NCBI
Celera2222,312,199 - 22,382,453 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,473,858 - 21,543,900 (-)NCBIHuRef
CHM1_12238,466,463 - 38,536,813 (-)NCBICHM1_1
T2T-CHM13v2.02238,574,672 - 38,644,982 (-)NCBIT2T-CHM13v2.0
Pla2g6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,170,428 - 79,212,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,170,428 - 79,212,590 (-)EnsemblGRCm39 Ensembl
GRCm381579,286,228 - 79,328,385 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,286,228 - 79,328,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,116,658 - 79,158,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,113,483 - 79,155,423 (-)NCBIMGSCv36mm8
Celera1581,406,243 - 81,447,891 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
Pla2g6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,731,803 - 112,771,978 (-)NCBIGRCr8
mRatBN7.27110,851,378 - 110,891,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,851,378 - 110,891,114 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,600,016 - 112,639,830 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,823,550 - 114,863,364 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,792,914 - 114,832,727 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,519,479 - 120,559,716 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,519,467 - 120,559,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,512,621 - 120,553,123 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,266,784 - 117,307,172 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,301,013 - 117,341,212 (-)NCBI
Celera7107,184,586 - 107,224,721 (-)NCBICelera
Cytogenetic Map7q34NCBI
Pla2g6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,429,589 - 24,482,537 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,431,592 - 24,482,229 (-)NCBIChiLan1.0ChiLan1.0
PLA2G6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,941,354 - 48,048,385 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,628,097 - 50,726,198 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,998,060 - 19,094,507 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,849,794 - 36,930,403 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,849,794 - 36,919,509 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl2236,823,637 - 36,848,824 (-)Ensemblpanpan1.1panPan2
PLA2G6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,499,033 - 26,559,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,509,695 - 26,634,087 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,454,462 - 26,514,846 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,290,620 - 27,351,106 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,290,619 - 27,351,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,011,336 - 27,071,396 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,322,574 - 27,382,942 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,499,582 - 27,559,773 (+)NCBIUU_Cfam_GSD_1.0
PLA2G6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,713,873 - 9,777,918 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,713,809 - 9,777,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,996,400 - 7,060,421 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,818,575 - 20,884,243 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045104,880,026 - 104,951,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,792,807 - 9,843,457 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,792,778 - 9,841,817 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040278081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040278088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040278099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040278113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000005303   ⟹   ENSSTOP00000004753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364923,011,866 - 3,060,952 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034492   ⟹   ENSSTOP00000031636
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364923,011,772 - 3,060,986 (+)Ensembl
RefSeq Acc Id: XM_005322258   ⟹   XP_005322315
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,001,437 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,011,851 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357277   ⟹   XP_013212731
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,001,383 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,011,798 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357278   ⟹   XP_013212732
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,006,105 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,016,554 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357281   ⟹   XP_013212735
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,001,383 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,011,798 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724416   ⟹   XP_021580091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,001,363 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,011,785 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724417   ⟹   XP_021580092
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,001,353 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,011,809 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724418   ⟹   XP_021580093
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,010,392 - 10,049,947 (+)NCBI
SpeTri2.0NW_0049364923,011,779 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724420   ⟹   XP_021580095
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,001,353 - 10,050,548 (+)NCBI
SpeTri2.0NW_0049364923,011,752 - 3,060,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040278081   ⟹   XP_040134015
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,010,393 - 10,050,548 (+)NCBI
RefSeq Acc Id: XM_040278088   ⟹   XP_040134022
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,006,112 - 10,050,548 (+)NCBI
RefSeq Acc Id: XM_040278099   ⟹   XP_040134033
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,010,393 - 10,050,548 (+)NCBI
RefSeq Acc Id: XM_040278113   ⟹   XP_040134047
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,027,407 - 10,050,548 (+)NCBI
RefSeq Acc Id: XP_005322315   ⟸   XM_005322258
- Peptide Label: isoform X2
- UniProtKB: A0A287DDQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212731   ⟸   XM_013357277
- Peptide Label: isoform X2
- UniProtKB: A0A287DDQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212735   ⟸   XM_013357281
- Peptide Label: isoform X5
- UniProtKB: I3M5U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212732   ⟸   XM_013357278
- Peptide Label: isoform X2
- UniProtKB: A0A287DDQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580095   ⟸   XM_021724420
- Peptide Label: isoform X5
- UniProtKB: I3M5U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580093   ⟸   XM_021724418
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021580091   ⟸   XM_021724416
- Peptide Label: isoform X2
- UniProtKB: A0A287DDQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580092   ⟸   XM_021724417
- Peptide Label: isoform X2
- UniProtKB: A0A287DDQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040134022   ⟸   XM_040278088
- Peptide Label: isoform X2
- UniProtKB: A0A287DDQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134015   ⟸   XM_040278081
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040134033   ⟸   XM_040278099
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040134047   ⟸   XM_040278113
- Peptide Label: isoform X6
RefSeq Acc Id: ENSSTOP00000004753   ⟸   ENSSTOT00000005303
RefSeq Acc Id: ENSSTOP00000031636   ⟸   ENSSTOT00000034492
Protein Domains
PNPLA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005291 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005303.3 UniProtKB/TrEMBL
  ENSSTOT00000034492.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  Cytosolic phospholipase A2 catalytic domain UniProtKB/TrEMBL
InterPro Acyl_Trfase/lysoPLipase UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  PLPL9 UniProtKB/TrEMBL
  PNPLA_dom UniProtKB/TrEMBL
NCBI Gene Pla2g6 ENTREZGENE
PANTHER 85/88 KDA CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 UniProtKB/TrEMBL
  CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Patatin UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  PNPLA UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF52151 UniProtKB/TrEMBL
UniProt A0A287DDQ4 ENTREZGENE, UniProtKB/TrEMBL
  I3M5U6 ENTREZGENE, UniProtKB/TrEMBL