Efhc1 (EF-hand domain containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Efhc1 (EF-hand domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Efhc1
Name: EF-hand domain containing 1
RGD ID: 12503203
Description: ENCODES a protein that exhibits alpha-tubulin binding (inferred); INVOLVED IN cerebral cortex cell migration (inferred); cilium-dependent cell motility (inferred); mitotic cytokinesis (inferred); ASSOCIATED WITH absence epilepsy (ortholog); childhood absence epilepsy (ortholog); epilepsy (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); cilium (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EF-hand domain containing 1, transcript variant X1; EF-hand domain containing 1, transcript variant X2; EF-hand domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494655,559,021 - 55,613,066 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364768,347,086 - 8,401,224 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364768,347,907 - 8,401,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Efhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494655,559,021 - 55,613,066 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364768,347,086 - 8,401,224 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364768,347,907 - 8,401,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38652,420,342 - 52,497,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl652,362,123 - 52,529,886 (+)EnsemblGRCh38hg38GRCh38
GRCh37652,285,140 - 52,361,996 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36652,392,953 - 52,468,542 (+)NCBINCBI36Build 36hg18NCBI36
Build 34652,393,070 - 52,465,177NCBI
Celera653,946,143 - 54,021,738 (+)NCBICelera
Cytogenetic Map6p12.2NCBI
HuRef652,116,296 - 52,191,906 (+)NCBIHuRef
CHM1_1652,287,207 - 52,362,796 (+)NCBICHM1_1
T2T-CHM13v2.0652,259,137 - 52,336,010 (+)NCBIT2T-CHM13v2.0
Efhc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39121,021,776 - 21,061,065 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl121,021,850 - 21,061,065 (+)EnsemblGRCm39 Ensembl
GRCm38120,951,553 - 20,990,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,951,626 - 20,990,841 (+)EnsemblGRCm38mm10GRCm38
MGSCv37120,941,707 - 20,980,922 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36120,936,839 - 20,975,992 (+)NCBIMGSCv36mm8
Celera120,826,576 - 20,865,461 (+)NCBICelera
Cytogenetic Map1A4NCBI
cM Map16.5NCBI
Efhc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8930,872,238 - 30,910,703 (+)NCBIGRCr8
mRatBN7.2923,375,815 - 23,414,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl923,375,840 - 23,414,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx931,867,029 - 31,905,726 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0936,987,734 - 37,026,420 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0935,302,944 - 35,341,647 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0927,068,505 - 27,107,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl927,068,443 - 27,107,709 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0925,924,344 - 25,962,902 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4919,695,815 - 19,750,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera920,938,313 - 20,989,329 (+)NCBICelera
Cytogenetic Map9q13NCBI
Efhc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554115,624,053 - 5,677,534 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554115,624,510 - 5,676,165 (-)NCBIChiLan1.0ChiLan1.0
EFHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2566,885,919 - 66,959,754 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1662,762,852 - 62,836,780 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0651,972,041 - 52,044,219 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1653,239,474 - 53,311,798 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl653,239,474 - 53,344,404 (+)Ensemblpanpan1.1panPan2
EFHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11220,068,287 - 20,131,621 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1220,067,881 - 20,131,619 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1219,965,029 - 20,028,364 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01220,567,201 - 20,630,760 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1220,566,156 - 20,630,767 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11220,072,968 - 20,136,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01220,176,667 - 20,240,190 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01220,315,041 - 20,378,596 (+)NCBIUU_Cfam_GSD_1.0
EFHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,239,230 - 46,348,667 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,244,915 - 46,320,261 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27133,966,766 - 134,041,685 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EFHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11720,011,684 - 20,083,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1720,011,530 - 20,083,592 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604452,324,800 - 52,398,569 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efhc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248553,611,176 - 3,677,675 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248553,611,016 - 3,677,813 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000012270   ⟹   ENSSTOP00000010997
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364768,347,086 - 8,401,224 (-)Ensembl
RefSeq Acc Id: XM_005318568   ⟹   XP_005318625
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494655,559,021 - 55,613,066 (+)NCBI
SpeTri2.0NW_0049364768,347,907 - 8,401,224 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721832   ⟹   XP_021577507
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494655,559,022 - 55,613,066 (+)NCBI
SpeTri2.0NW_0049364768,347,907 - 8,401,171 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318625 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577507 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010997.3
GenBank Protein KAG3289631 (Get FASTA)   NCBI Sequence Viewer  
  KAG3289632 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005318625   ⟸   XM_005318568
- Peptide Label: isoform X1
- UniProtKB: I3MIV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577507   ⟸   XM_021721832
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000010997   ⟸   ENSSTOT00000012270
Protein Domains
DM10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012272 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012270.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.170 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro DM10_dom UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EFHC1/EFHC2/EFHB UniProtKB/TrEMBL
NCBI Gene Efhc1 ENTREZGENE
PANTHER EF-HAND DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR12086 UniProtKB/TrEMBL
Pfam DUF1126 UniProtKB/TrEMBL
PROSITE DM10 UniProtKB/TrEMBL
SMART DM10 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3MIV0 ENTREZGENE, UniProtKB/TrEMBL