Slco3a1 (solute carrier organic anion transporter family member 3A1) - Rat Genome Database

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Gene: Slco3a1 (solute carrier organic anion transporter family member 3A1) Ictidomys tridecemlineatus
Analyze
Symbol: Slco3a1
Name: solute carrier organic anion transporter family member 3A1
RGD ID: 12501557
Description: ENCODES a protein that exhibits organic anion transmembrane transporter activity (inferred); prostaglandin transmembrane transporter activity (inferred); sodium-independent organic anion transmembrane transporter activity (inferred); INVOLVED IN prostaglandin transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN basal plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640135,491,779 - 135,786,720 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648310,547,687 - 10,778,752 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648310,554,049 - 10,778,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slco3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640135,491,779 - 135,786,720 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648310,547,687 - 10,778,752 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648310,554,049 - 10,778,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381591,853,708 - 92,172,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1591,853,708 - 92,172,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371592,396,938 - 92,715,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361590,197,950 - 90,507,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341590,197,949 - 90,507,783NCBI
Celera1568,809,625 - 69,127,530 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1568,535,792 - 68,852,636 (+)NCBIHuRef
CHM1_11592,238,177 - 92,556,655 (+)NCBICHM1_1
T2T-CHM13v2.01589,615,458 - 89,934,870 (+)NCBIT2T-CHM13v2.0
Slco3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39773,925,166 - 74,204,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl773,925,167 - 74,204,528 (-)EnsemblGRCm39 Ensembl
GRCm38774,275,418 - 74,554,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl774,275,419 - 74,554,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37781,420,304 - 81,699,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36774,148,931 - 74,428,293 (-)NCBIMGSCv36mm8
Celera771,722,299 - 72,002,017 (-)NCBICelera
Cytogenetic Map7D1NCBI
cM Map742.95NCBI
Slco3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81137,516,037 - 137,797,836 (-)NCBIGRCr8
mRatBN7.21128,106,232 - 128,388,043 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,106,228 - 128,387,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1136,062,978 - 136,336,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,233,107 - 143,506,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,101,551 - 136,374,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01135,790,854 - 136,073,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1135,790,810 - 136,073,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01136,793,300 - 137,070,909 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41129,580,126 - 130,077,110 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11129,658,468 - 130,155,453 (-)NCBI
Celera1120,235,201 - 120,503,802 (-)NCBICelera
Cytogenetic Map1q31NCBI
Slco3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541620,186,940 - 20,483,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541620,186,940 - 20,483,844 (+)NCBIChiLan1.0ChiLan1.0
SLCO3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21681,399,080 - 81,720,058 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11585,099,736 - 85,420,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01570,537,924 - 70,858,714 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11589,735,202 - 90,055,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1589,739,022 - 90,054,678 (+)Ensemblpanpan1.1panPan2
SLCO3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1347,927,280 - 48,233,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl347,927,664 - 48,233,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha350,628,974 - 50,868,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0348,346,093 - 48,649,188 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl348,346,095 - 48,649,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1347,847,277 - 48,150,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0348,078,812 - 48,381,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0348,420,025 - 48,723,118 (-)NCBIUU_Cfam_GSD_1.0
SLCO3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl786,777,920 - 87,103,309 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1786,777,919 - 87,103,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2792,719,394 - 93,045,275 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO3A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12910,418,938 - 10,735,503 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605935,952,514 - 36,274,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco3a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476811,536,168 - 11,855,331 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476811,537,311 - 11,855,224 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000012989   ⟹   ENSSTOP00000011639
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648310,547,687 - 10,778,752 (-)Ensembl
RefSeq Acc Id: XM_013356338   ⟹   XP_013211792
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640135,491,779 - 135,780,667 (+)NCBI
SpeTri2.0NW_00493648310,554,049 - 10,778,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275623   ⟹   XP_040131557
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640135,491,779 - 135,786,720 (+)NCBI
RefSeq Acc Id: XM_040275624   ⟹   XP_040131558
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640135,491,779 - 135,775,375 (+)NCBI
RefSeq Acc Id: XR_005729591
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640135,491,779 - 135,786,720 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013211792 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131557 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131558 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011639.3
GenBank Protein KAG3262627 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013211792   ⟸   XM_013356338
- Peptide Label: isoform X1
- UniProtKB: I3MK55 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131557   ⟸   XM_040275623
- Peptide Label: isoform X2
- UniProtKB: I3MK55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131558   ⟸   XM_040275624
- Peptide Label: isoform X3
- UniProtKB: I3MK55 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000011639   ⟸   ENSSTOT00000012989
Protein Domains
Kazal-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012990 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012989.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro Kazal_dom UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  OATP UniProtKB/TrEMBL
NCBI Gene Slco3a1 ENTREZGENE
PANTHER PTHR11388 UniProtKB/TrEMBL
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 3A1 UniProtKB/TrEMBL
Pfam Kazal_2 UniProtKB/TrEMBL
  OATP UniProtKB/TrEMBL
PROSITE KAZAL_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF100895 UniProtKB/TrEMBL
  SSF103473 UniProtKB/TrEMBL
UniProt I3MK55 ENTREZGENE, UniProtKB/TrEMBL