Has1 (hyaluronan synthase 1) - Rat Genome Database

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Gene: Has1 (hyaluronan synthase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Has1
Name: hyaluronan synthase 1
RGD ID: 12500010
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to platelet-derived growth factor stimulus (ortholog); estrous cycle (ortholog); hyaluronan biosynthetic process (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); genetic disease (ortholog); Kidney Reperfusion Injury (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093494,768,242 - 4,775,106 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937026125,881 - 135,235 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937026125,622 - 132,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
Golgi apparatus  (ISO)
membrane  (IEA)
plasma membrane  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Has1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093494,768,242 - 4,775,106 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937026125,881 - 135,235 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937026125,622 - 132,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381951,713,112 - 51,723,991 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1951,713,112 - 51,723,991 (-)EnsemblGRCh38hg38GRCh38
GRCh371952,216,365 - 52,227,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,908,177 - 56,919,033 (-)NCBINCBI36Build 36hg18NCBI36
Build 341956,908,176 - 56,919,033NCBI
Celera1949,265,901 - 49,276,762 (-)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1948,547,305 - 48,558,022 (-)NCBIHuRef
CHM1_11952,218,163 - 52,229,047 (-)NCBICHM1_1
T2T-CHM13v2.01954,800,274 - 54,811,173 (-)NCBIT2T-CHM13v2.0
Has1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391718,063,588 - 18,075,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1718,063,585 - 18,075,467 (-)EnsemblGRCm39 Ensembl
GRCm381717,833,691 - 17,855,589 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1717,843,323 - 17,855,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv371717,980,290 - 17,992,152 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361717,547,941 - 17,559,804 (-)NCBIMGSCv36mm8
Celera1718,784,007 - 18,795,939 (-)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1710.53NCBI
Has1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,366,460 - 67,378,686 (-)NCBIGRCr8
mRatBN7.2158,693,411 - 58,705,653 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,693,411 - 58,705,397 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx163,518,026 - 63,530,014 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0172,210,671 - 72,222,664 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,428,072 - 65,440,064 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0159,720,612 - 59,732,409 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl159,720,612 - 59,732,409 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0160,640,270 - 60,652,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4156,503,365 - 56,516,133 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1156,506,309 - 56,519,078 (-)NCBI
Celera154,874,356 - 54,879,329 (-)NCBICelera
Cytogenetic Map1q12NCBI
Has1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955558826,853 - 836,809 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955558826,853 - 836,809 (+)NCBIChiLan1.0ChiLan1.0
HAS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22057,756,571 - 57,767,543 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11959,680,847 - 59,691,810 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01948,657,165 - 48,668,130 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11957,537,049 - 57,547,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1957,537,049 - 57,547,804 (-)Ensemblpanpan1.1panPan2
HAS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,376,091 - 105,386,043 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,376,536 - 105,385,134 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1104,949,702 - 104,959,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01105,886,101 - 105,895,963 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1105,885,956 - 105,895,628 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11105,558,334 - 105,568,196 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,199,396 - 105,209,300 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01105,994,224 - 106,004,086 (+)NCBIUU_Cfam_GSD_1.0
HAS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl658,302,799 - 58,313,486 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1658,303,274 - 58,313,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,877,028 - 51,888,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1644,540,036 - 44,552,396 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl644,540,363 - 44,547,711 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607324,594,280 - 24,606,885 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Has1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248323,329,920 - 3,336,290 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248323,327,626 - 3,341,928 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009479   ⟹   ENSSTOP00000008502
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004937026125,881 - 135,235 (-)Ensembl
RefSeq Acc Id: XM_040279851   ⟹   XP_040135785
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093494,768,242 - 4,775,106 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040135785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008502.3
GenBank Protein KAG3255740 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040135785   ⟸   XM_040279851
- UniProtKB: I3MDM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000008502   ⟸   ENSSTOT00000009479


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009484 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009479.3 UniProtKB/TrEMBL
InterPro Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Has1 ENTREZGENE
PANTHER HYALURONAN SYNTHASE UniProtKB/TrEMBL
  PTHR22913:SF4 UniProtKB/TrEMBL
Pfam Chitin_synth_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3MDM6 ENTREZGENE, UniProtKB/TrEMBL