Trip11 (thyroid hormone receptor interactor 11) - Rat Genome Database

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Gene: Trip11 (thyroid hormone receptor interactor 11) Ictidomys tridecemlineatus
Analyze
Symbol: Trip11
Name: thyroid hormone receptor interactor 11
RGD ID: 12499788
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN bone development (ortholog); chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); Golgi organization (ortholog); ASSOCIATED WITH achondrogenesis (ortholog); achondrogenesis type IA (ortholog); autism spectrum disorder (ortholog); FOUND IN inner acrosomal membrane (ortholog); outer acrosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thyroid hormone receptor interactor 11, transcript variant X1; thyroid hormone receptor interactor 11, transcript variant X2; thyroid receptor-interacting protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936733234,531 - 299,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936733233,723 - 300,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Trip11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936733234,531 - 299,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936733233,723 - 300,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381491,965,991 - 92,040,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1491,965,991 - 92,040,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371492,432,335 - 92,506,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361491,505,614 - 91,576,139 (-)NCBINCBI36Build 36hg18NCBI36
Build 341491,505,613 - 91,576,139NCBI
Celera1472,486,852 - 72,559,002 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1472,615,074 - 72,687,331 (-)NCBIHuRef
CHM1_11492,372,573 - 92,444,720 (-)NCBICHM1_1
T2T-CHM13v2.01486,195,456 - 86,269,539 (-)NCBIT2T-CHM13v2.0
Trip11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912101,800,304 - 101,879,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12101,800,302 - 101,879,526 (-)EnsemblGRCm39 Ensembl
GRCm3812101,834,045 - 101,913,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12101,834,043 - 101,913,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712103,075,582 - 103,151,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612102,235,058 - 102,314,813 (-)NCBIMGSCv36mm8
Celera12103,046,997 - 103,129,958 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.3NCBI
Trip11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86126,760,263 - 126,832,619 (-)NCBIGRCr8
mRatBN7.26120,995,242 - 121,067,693 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6120,998,733 - 121,067,781 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6121,152,341 - 121,216,900 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06121,447,603 - 121,512,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06120,783,922 - 120,848,473 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06125,741,520 - 125,812,926 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6125,742,796 - 125,812,517 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06134,953,134 - 135,024,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46126,119,081 - 126,188,777 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6118,497,405 - 118,564,538 (-)NCBICelera
Cytogenetic Map6q32NCBI
Trip11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543814,322,576 - 14,394,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543814,327,400 - 14,394,022 (-)NCBIChiLan1.0ChiLan1.0
TRIP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21593,124,743 - 93,209,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11492,343,082 - 92,429,482 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01472,601,649 - 72,675,784 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11491,945,392 - 92,019,231 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1491,945,392 - 92,019,231 (-)Ensemblpanpan1.1panPan2
TRIP11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.181,244,104 - 1,314,251 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl81,247,155 - 1,354,720 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha81,263,077 - 1,333,338 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.081,293,187 - 1,363,397 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl81,294,502 - 1,363,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.181,231,115 - 1,301,352 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.081,187,556 - 1,257,315 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.081,308,407 - 1,378,640 (-)NCBIUU_Cfam_GSD_1.0
TRIP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7113,524,430 - 113,600,088 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17113,524,406 - 113,600,411 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27120,132,495 - 120,208,065 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12469,724,614 - 69,793,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2469,751,193 - 69,793,039 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605356,972,255 - 57,042,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trip11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247348,608,325 - 8,682,299 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247348,604,565 - 8,682,597 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015651   ⟹   ENSSTOP00000014008
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936733234,531 - 299,639 (-)Ensembl
RefSeq Acc Id: XM_013364688   ⟹   XP_013220142
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBI
SpeTri2.0NW_004936733233,723 - 300,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735826   ⟹   XP_021591501
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,182,079 - 13,233,555 (+)NCBI
SpeTri2.0NW_004936733233,723 - 284,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275279   ⟹   XP_040131213
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBI
RefSeq Acc Id: XM_040275280   ⟹   XP_040131214
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,167,028 - 13,233,555 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013220142 (Get FASTA)   NCBI Sequence Viewer  
  XP_021591501 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131213 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131214 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014008.3
GenBank Protein KAG3260497 (Get FASTA)   NCBI Sequence Viewer  
  KAG3260498 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013220142   ⟸   XM_013364688
- Peptide Label: isoform X1
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591501   ⟸   XM_021735826
- Peptide Label: isoform X4
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131214   ⟸   XM_040275280
- Peptide Label: isoform X3
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131213   ⟸   XM_040275279
- Peptide Label: isoform X2
- UniProtKB: I3MQ38 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000014008   ⟸   ENSSTOT00000015651
Protein Domains
GRIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015642 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015651.3 UniProtKB/TrEMBL
InterPro GRAB UniProtKB/TrEMBL
  GRIP_dom UniProtKB/TrEMBL
NCBI Gene Trip11 ENTREZGENE
PANTHER MYOSIN HEAVY CHAIN - RELATED UniProtKB/TrEMBL
  THYROID RECEPTOR-INTERACTING PROTEIN 11 UniProtKB/TrEMBL
Pfam GRAB UniProtKB/TrEMBL
PROSITE GRIP UniProtKB/TrEMBL
UniProt I3MQ38 ENTREZGENE, UniProtKB/TrEMBL