Tnnt3 (troponin T3, fast skeletal type)

Gene: Tnnt3 (troponin T3, fast skeletal type) Ictidomys tridecemlineatus

Analyze

Symbol:

Tnnt3

Name:

troponin T3, fast skeletal type

RGD ID:

12498508

Description:

ENCODES a protein that exhibits actin binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN regulation of striated muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN troponin complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

troponin T, fast skeletal muscle; troponin T3, fast skeletal type, transcript variant X1; troponin T3, fast skeletal type, transcript variant X10; troponin T3, fast skeletal type, transcript variant X11; troponin T3, fast skeletal type, transcript variant X12; troponin T3, fast skeletal type, transcript variant X13; troponin T3, fast skeletal type, transcript variant X14; troponin T3, fast skeletal type, transcript variant X2; troponin T3, fast skeletal type, transcript variant X3; troponin T3, fast skeletal type, transcript variant X4; troponin T3, fast skeletal type, transcript variant X5; troponin T3, fast skeletal type, transcript variant X6; troponin T3, fast skeletal type, transcript variant X7; troponin T3, fast skeletal type, transcript variant X8; troponin T3, fast skeletal type, transcript variant X9

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	1,551,243 - 1,567,924 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936816	805,317 - 822,043 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936816	805,360 - 822,044 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arthrogryposis multiplex congenita (ISO)

delta beta-thalassemia (ISO)

developmental and epileptic encephalopathy (ISO)

distal arthrogryposis (ISO)

distal arthrogryposis type 2B (ISO)

distal arthrogryposis type 2B1 (ISO)

distal arthrogryposis type 2B2 (ISO)

early infantile epileptic encephalopathy (ISO)

genetic disease (ISO)

immunodeficiency 39 (ISO)

microcephaly (ISO)

neuronal ceroid lipofuscinosis (ISO)

osteochondrodysplasia (ISO)

Segawa Syndrome, Autosomal Recessive (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of muscle contraction (IEA)

regulation of striated muscle contraction (IEA,ISO)

sarcomere organization (IEA)

skeletal muscle contraction (IEA)

Cellular Component

troponin complex (IEA,ISO)

Molecular Function

actin binding (IEA,ISO)

calcium-dependent protein binding (IEA)

tropomyosin binding (IEA,ISO)

troponin C binding (IEA)

troponin I binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

acebutolol pharmacodynamics pathway (ISO)

adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway (ISO)

amiodarone pharmacodynamics pathway (ISO)

amlodipine pharmacodynamics pathway (ISO)

atenolol pharmacodynamics pathway (ISO)

betaxolol pharmacodynamics pathway (ISO)

bisoprolol pharmacodynamics pathway (ISO)

bupranolol drug pathway (ISO)

bupranolol pharmacodynamics pathway (ISO)

carvedilol pharmacodynamics pathway (ISO)

diltiazem pharmacodynamics pathway (ISO)

disopyramide pharmacodynamics pathway (ISO)

dobutamine pharmacodynamics pathway (ISO)

esmolol pharmacodynamics pathway (ISO)

flecainde pharmacodynamics pathway (ISO)

fosphenytoin pharmacodynamics pathway (ISO)

ibutilide pharmacodynamics pathway (ISO)

isoprenaline pharmacodynamics pathway (ISO)

isradipine pharmacodynamics pathway (ISO)

levobunolol pharmacodynamics pathway (ISO)

lidocaine pharmacodynamics pathway (ISO)

metoprolol pharmacodynamics pathway (ISO)

mexiletine pharmacodynamics pathway (ISO)

nadolol pharmacodynamics pathway (ISO)

nebivolol pharmacodynamics pathway (ISO)

nifedipine pharmacodynamics pathway (ISO)

nimodipine pharmacodynamics pathway (ISO)

nisoldipine pharmacodynamics pathway (ISO)

nitrendipine pharmacodynamics pathway (ISO)

penbutolol pharmacodynamics pathway (ISO)

phenytoin pharmacodynamics pathway (ISO)

pindolol pharmacodynamics pathway (ISO)

procainamide pharmacodynamics pathway (ISO)

propranolol pharmacodynamics pathway (ISO)

quinidine pharmacodynamics pathway (ISO)

sotalol pharmacodynamics pathway (ISO)

timolol pharmacodynamics pathway (ISO)

verapamil pharmacodynamics pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Tnnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	1,551,243 - 1,567,924 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936816	805,317 - 822,043 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936816	805,360 - 822,044 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNNT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	1,919,552 - 1,938,702 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	1,919,703 - 1,938,706 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	1,940,933 - 1,959,932 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	1,897,445 - 1,916,514 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	1,900,668 - 1,916,510	NCBI
Celera	11	11,177 - 30,313 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	1,709,242 - 1,728,503 (+)	NCBI		HuRef
CHM1_1	11	1,939,717 - 1,958,858 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	1,983,592 - 2,002,746 (+)	NCBI		T2T-CHM13v2.0

Tnnt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	142,052,530 - 142,069,746 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	142,052,573 - 142,069,746 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	142,498,771 - 142,516,213 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	142,498,836 - 142,516,009 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	149,684,741 - 149,701,914 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	142,308,233 - 142,325,393 (+)	NCBI		MGSCv36	mm8
Celera	7	142,254,685 - 142,271,858 (+)	NCBI		Celera
Cytogenetic Map	7	F5	NCBI
cM Map	7	87.94	NCBI

Tnnt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	207,082,014 - 207,099,014 (+)	NCBI		GRCr8
mRatBN7.2	1	197,652,535 - 197,669,736 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	197,652,431 - 197,669,535 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	206,025,246 - 206,042,256 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	213,111,112 - 213,128,127 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	205,785,265 - 205,802,280 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	215,666,628 - 215,683,628 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	215,666,628 - 215,683,628 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	222,561,418 - 222,578,418 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	202,748,063 - 202,761,965 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	202,908,518 - 202,917,537 (+)	NCBI
Celera	1	195,269,899 - 195,286,899 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Tnnt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	13,702,015 - 13,718,915 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	13,702,015 - 13,718,915 (+)	NCBI	ChiLan1.0	ChiLan1.0

TNNT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	4,328,279 - 4,340,866 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	3,539,861 - 3,552,260 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	1,936,614 - 1,955,784 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	1,968,184 - 1,987,846 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	1,968,184 - 1,987,849 (+)	Ensembl	panpan1.1		panPan2

TNNT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	46,131,925 - 46,148,577 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	46,074,700 - 46,149,131 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	44,741,795 - 44,758,468 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	46,812,971 - 46,829,661 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	46,756,047 - 46,829,658 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	46,260,272 - 46,276,949 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	45,840,558 - 45,857,236 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	46,586,814 - 46,603,499 (+)	NCBI		UU_Cfam_GSD_1.0

TNNT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	1,299,174 - 1,316,517 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	1,297,826 - 1,316,865 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TNNT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	1,718,729 - 1,738,271 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	1,718,523 - 1,738,477 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	98,918,119 - 98,934,360 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnnt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	14,787,248 - 14,802,098 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	14,784,267 - 14,801,477 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013365412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024894 ⟹ ENSSTOP00000014849

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	807,893 - 821,847 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000032234 ⟹ ENSSTOP00000024804

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	807,893 - 821,847 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033747 ⟹ ENSSTOP00000029334

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	805,317 - 822,043 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033929 ⟹ ENSSTOP00000029912

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	805,373 - 822,043 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000034190 ⟹ ENSSTOP00000029054

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	812,943 - 821,847 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000037411 ⟹ ENSSTOP00000031557

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	816,447 - 821,847 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000037648 ⟹ ENSSTOP00000026762

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	807,893 - 821,847 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000041942 ⟹ ENSSTOP00000028817

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	805,373 - 822,043 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000042216 ⟹ ENSSTOP00000028386

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	807,875 - 818,975 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000043285 ⟹ ENSSTOP00000024791

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936816	805,369 - 822,043 (+)	Ensembl

RefSeq Acc Id:

XM_013365412 ⟹ XP_013220866

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,246 - 1,567,924 (+)	NCBI
SpeTri2.0	NW_004936816	805,373 - 822,044 (+)	NCBI

Sequence:

show sequence

ACACGAGGGTGCAGCCGGGAGGCAGTGCCTGTGCTGGACCTGTCCACAGGGAGTTCTCGTCCTT
CTCAGGCGTGACCACAGAAACAGCCCACCTCCACCATGTCTGACGAGGAAGTTGAACAGGTTGA
GGAGCAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAGGAAGCAGAAGTCCAGGAGGAAGCCCCT
GAAGTTCATGAACCAGAGGAGGTCCAGGAAGAGAGGAAGCCAAGACCCCAACTCACTGCTCCTA
AGATCCCGGAAGGGGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGCCAGAACAAGGACCT
CATGGAGCTGCAGGCCCTCATCGACAGCCACTTCGAAGCCCGGAAGAAAGAGGAGGAGGAGCTG
ATTGCCCTCAAAGAGAGGATCGAGAAGCGCCGGGCGGAGAGGGCTGAGCAGCAGAGGATCCGTG
CAGAGAAGGAGCGTGAGCGCCAGAACCGCCTGGCGGAGGAGAAGGCCCGGAGGGAGGAGGAGGA
CGCCAAGAGGAGGGCCGAGGACGACCTGAAGAAGAAGAAGGCCCTGTCCTCCATGGGGGCCAAC
TACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAGACGGCCCGGGAGATGA
AGAAGAAGATCCTGGCCGAGAGACGCAAGCCCCTCAACATCGACCACCTGGGCGACGACAAGCT
GAGGGACAAGGCTAAGGAGCTCTGGGAAACCCTGTACCAACTCGAGACGGACAAGTTTGAGTTT
GGGGAGAAGCTGAAACGCCAGAAATATGACATCACCACCCTCAGGAGCCGCATCGACCAGGCCC
AGAAGCACAGCAAGAAGGCCGGTGCCACCGCTAAGGGCAAAGTCGGTGGGCGCTGGAAGTAAAG
GGCCAGGAGGTCCCGCGGCAGAGACCCGGCCCCGGCGCACTCCAGCACCATCGCCCCAACACTC
GTGCCCAGGCTGCTTCTGGGGTTCCGGGACGCCGCCGGGGGTGGAGGGCCCCGCTGGAGCACCC
CCTTGTCTCTGCCGTCCCAGTCCCCACCCTCTGGGGTCTGTGAATAAAGCCAGCAGACCCCCCT
CCA

hide sequence

RefSeq Acc Id:

XM_013365413 ⟹ XP_013220867

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,243 - 1,567,924 (+)	NCBI
SpeTri2.0	NW_004936816	805,373 - 822,044 (+)	NCBI

Sequence:

show sequence

ACACGAGGGTGCAGCCGGGAGGCAGTGCCTGTGCTGGACCTGTCCACAGGGAGTTCTCGTCCTT
CTCAGGCGTGACCACAGAAACAGCCCACCTCCACCATGTCTGACGAGGAAGTTGAACAGGTTGA
GGAGCAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAGGAAGCAGAAGTCCAGGAGGAAGCCCCT
GAAGTTCATGAACCAGAGGAGGTCCAGGAAGAGAGGAAGCCAAGACCCCAACTCACTGCTCCTA
AGATCCCGGAAGGGGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGCCAGAACAAGGACCT
CATGGAGCTGCAGGCCCTCATCGACAGCCACTTCGAAGCCCGGAAGAAAGAGGAGGAGGAGCTG
ATTGCCCTCAAAGAGAGGATCGAGAAGCGCCGGGCGGAGAGGGCTGAGCAGCAGAGGATCCGTG
CAGAGAAGGAGCGTGAGCGCCAGAACCGCCTGGCGGAGGAGAAGGCCCGGAGGGAGGAGGAGGA
CGCCAAGAGGAGGGCCGAGGACGACCTGAAGAAGAAGAAGGCCCTGTCCTCCATGGGGGCCAAC
TACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAGACGGCCCGGGAGATGA
AGAAGAAGATCCTGGCCGAGAGACGCAAGCCCCTCAACATCGACCACCTGGGCGACGACAAGCT
GAGGGACAAGGCTAAGGAGCTCTGGGAAACCCTGTACCAACTCGAGACGGACAAGTTTGAGTTT
GGGGAGAAGCTGAAACGCCAGAAATATGACATCATGACCCTCCGGGCCAGAGTGGAGATGCTGG
CCAAGTTCAGCAAGAAGGCCGGTGCCACCGCTAAGGGCAAAGTCGGTGGGCGCTGGAAGTAAAG
GGCCAGGAGGTCCCGCGGCAGAGACCCGGCCCCGGCGCACTCCAGCACCATCGCCCCAACACTC
GTGCCCAGGCTGCTTCTGGGGTTCCGGGACGCCGCCGGGGGTGGAGGGCCCCGCTGGAGCACCC
CCTTGTCTCTGCCGTCCCAGTCCCCACCCTCTGGGGTCTGTGAATAAAGCCAGCAGACCCCCCT
CCA

hide sequence

RefSeq Acc Id:

XM_013365414 ⟹ XP_013220868

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,246 - 1,567,924 (+)	NCBI
SpeTri2.0	NW_004936816	805,373 - 822,044 (+)	NCBI

Sequence:

show sequence

ACACGAGGGTGCAGCCGGGAGGCAGTGCCTGTGCTGGACCTGTCCACAGGGAGTTCTCGTCCTT
CTCAGGCGTGACCACAGAAACAGCCCACCTCCACCATGTCTGACGAGGAAGTTGAACAGGTTGA
GGAGCAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAGGAAGAAGTCCAGGAGGAAGCCCCTGAA
GTTCATGAACCAGAGGAGGTCCAGGAAGAGAGGAAGCCAAGACCCCAACTCACTGCTCCTAAGA
TCCCGGAAGGGGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGCCAGAACAAGGACCTCAT
GGAGCTGCAGGCCCTCATCGACAGCCACTTCGAAGCCCGGAAGAAAGAGGAGGAGGAGCTGATT
GCCCTCAAAGAGAGGATCGAGAAGCGCCGGGCGGAGAGGGCTGAGCAGCAGAGGATCCGTGCAG
AGAAGGAGCGTGAGCGCCAGAACCGCCTGGCGGAGGAGAAGGCCCGGAGGGAGGAGGAGGACGC
CAAGAGGAGGGCCGAGGACGACCTGAAGAAGAAGAAGGCCCTGTCCTCCATGGGGGCCAACTAC
AGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAGACGGCCCGGGAGATGAAGA
AGAAGATCCTGGCCGAGAGACGCAAGCCCCTCAACATCGACCACCTGGGCGACGACAAGCTGAG
GGACAAGGCTAAGGAGCTCTGGGAAACCCTGTACCAACTCGAGACGGACAAGTTTGAGTTTGGG
GAGAAGCTGAAACGCCAGAAATATGACATCACCACCCTCAGGAGCCGCATCGACCAGGCCCAGA
AGCACAGCAAGAAGGCCGGTGCCACCGCTAAGGGCAAAGTCGGTGGGCGCTGGAAGTAAAGGGC
CAGGAGGTCCCGCGGCAGAGACCCGGCCCCGGCGCACTCCAGCACCATCGCCCCAACACTCGTG
CCCAGGCTGCTTCTGGGGTTCCGGGACGCCGCCGGGGGTGGAGGGCCCCGCTGGAGCACCCCCT
TGTCTCTGCCGTCCCAGTCCCCACCCTCTGGGGTCTGTGAATAAAGCCAGCAGACCCCCCTCCA

hide sequence

RefSeq Acc Id:

XM_013365419 ⟹ XP_013220873

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,246 - 1,567,924 (+)	NCBI
SpeTri2.0	NW_004936816	805,365 - 822,044 (+)	NCBI

Sequence:

show sequence

CCGCTATAACACGAGGGTGCAGCCGGGAGGCAGTGCCTGTGCTGGACCTGTCCACAGGGAGTTC
TCGTCCTTCTCAGGCGTGACCACAGAAACAGCCCACCTCCACCATGTCTGACGAGGAAGTTGAA
CAGGTTGAGGAGCAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAGGAAGCAGAAGTCCAGGAGG
AAGAGGAGGTCCAGGAAGAGAGGAAGCCAAGACCCCAACTCACTGCTCCTAAGATCCCGGAAGG
GGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGCCAGAACAAGGACCTCATGGAGCTGCAG
GCCCTCATCGACAGCCACTTCGAAGCCCGGAAGAAAGAGGAGGAGGAGCTGATTGCCCTCAAAG
AGAGGATCGAGAAGCGCCGGGCGGAGAGGGCTGAGCAGCAGAGGATCCGTGCAGAGAAGGAGCG
TGAGCGCCAGAACCGCCTGGCGGAGGAGAAGGCCCGGAGGGAGGAGGAGGACGCCAAGAGGAGG
GCCGAGGACGACCTGAAGAAGAAGAAGGCCCTGTCCTCCATGGGGGCCAACTACAGCAGCTACC
TGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAGACGGCCCGGGAGATGAAGAAGAAGATCCT
GGCCGAGAGACGCAAGCCCCTCAACATCGACCACCTGGGCGACGACAAGCTGAGGGACAAGGCT
AAGGAGCTCTGGGAAACCCTGTACCAACTCGAGACGGACAAGTTTGAGTTTGGGGAGAAGCTGA
AACGCCAGAAATATGACATCACCACCCTCAGGAGCCGCATCGACCAGGCCCAGAAGCACAGCAA
GAAGGCCGGTGCCACCGCTAAGGGCAAAGTCGGTGGGCGCTGGAAGTAAAGGGCCAGGAGGTCC
CGCGGCAGAGACCCGGCCCCGGCGCACTCCAGCACCATCGCCCCAACACTCGTGCCCAGGCTGC
TTCTGGGGTTCCGGGACGCCGCCGGGGGTGGAGGGCCCCGCTGGAGCACCCCCTTGTCTCTGCC
GTCCCAGTCCCCACCCTCTGGGGTCTGTGAATAAAGCCAGCAGACCCCCCTCCA

hide sequence

RefSeq Acc Id:

XM_013365422 ⟹ XP_013220876

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,246 - 1,567,924 (+)	NCBI
SpeTri2.0	NW_004936816	805,361 - 822,044 (+)	NCBI

Sequence:

show sequence

AATGCCGCTATAACACGAGGGTGCAGCCGGGAGGCAGTGCCTGTGCTGGACCTGTCCACAGGGA
GTTCTCGTCCTTCTCAGGCGTGACCACAGAAACAGCCCACCTCCACCATGTCTGACGAGGAAGT
TGAACAGGTTGAGGAGCAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAGGAAGAGGAGGTCCAG
GAAGAGAGGAAGCCAAGACCCCAACTCACTGCTCCTAAGATCCCGGAAGGGGAGAAAGTAGACT
TTGATGACATCCAGAAGAAGCGCCAGAACAAGGACCTCATGGAGCTGCAGGCCCTCATCGACAG
CCACTTCGAAGCCCGGAAGAAAGAGGAGGAGGAGCTGATTGCCCTCAAAGAGAGGATCGAGAAG
CGCCGGGCGGAGAGGGCTGAGCAGCAGAGGATCCGTGCAGAGAAGGAGCGTGAGCGCCAGAACC
GCCTGGCGGAGGAGAAGGCCCGGAGGGAGGAGGAGGACGCCAAGAGGAGGGCCGAGGACGACCT
GAAGAAGAAGAAGGCCCTGTCCTCCATGGGGGCCAACTACAGCAGCTACCTGGCCAAGGCTGAC
CAGAAGAGAGGCAAGAAGCAGACGGCCCGGGAGATGAAGAAGAAGATCCTGGCCGAGAGACGCA
AGCCCCTCAACATCGACCACCTGGGCGACGACAAGCTGAGGGACAAGGCTAAGGAGCTCTGGGA
AACCCTGTACCAACTCGAGACGGACAAGTTTGAGTTTGGGGAGAAGCTGAAACGCCAGAAATAT
GACATCACCACCCTCAGGAGCCGCATCGACCAGGCCCAGAAGCACAGCAAGAAGGCCGGTGCCA
CCGCTAAGGGCAAAGTCGGTGGGCGCTGGAAGTAAAGGGCCAGGAGGTCCCGCGGCAGAGACCC
GGCCCCGGCGCACTCCAGCACCATCGCCCCAACACTCGTGCCCAGGCTGCTTCTGGGGTTCCGG
GACGCCGCCGGGGGTGGAGGGCCCCGCTGGAGCACCCCCTTGTCTCTGCCGTCCCAGTCCCCAC
CCTCTGGGGTCTGTGAATAAAGCCAGCAGACCCCCCTCCA

hide sequence

RefSeq Acc Id:

XM_021720542 ⟹ XP_021576217

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,246 - 1,567,924 (+)	NCBI
SpeTri2.0	NW_004936816	805,373 - 822,044 (+)	NCBI

Sequence:

show sequence

ACACGAGGGTGCAGCCGGGAGGCAGTGCCTGTGCTGGACCTGTCCACAGGGAGTTCTCGTCCTT
CTCAGGCGTGACCACAGAAACAGCCCACCTCCACCATGTCTGACGAGGAAGTTGAACAGGTTGA
GGAGCAGTACGAGGAGGAAGAGGAGGTCCAGGAAGAGAGGAAGCCAAGACCCCAACTCACTGCT
CCTAAGATCCCGGAAGGGGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGCCAGAACAAGG
ACCTCATGGAGCTGCAGGCCCTCATCGACAGCCACTTCGAAGCCCGGAAGAAAGAGGAGGAGGA
GCTGATTGCCCTCAAAGAGAGGATCGAGAAGCGCCGGGCGGAGAGGGCTGAGCAGCAGAGGATC
CGTGCAGAGAAGGAGCGTGAGCGCCAGAACCGCCTGGCGGAGGAGAAGGCCCGGAGGGAGGAGG
AGGACGCCAAGAGGAGGGCCGAGGACGACCTGAAGAAGAAGAAGGCCCTGTCCTCCATGGGGGC
CAACTACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAGACGGCCCGGGAG
ATGAAGAAGAAGATCCTGGCCGAGAGACGCAAGCCCCTCAACATCGACCACCTGGGCGACGACA
AGCTGAGGGACAAGGCTAAGGAGCTCTGGGAAACCCTGTACCAACTCGAGACGGACAAGTTTGA
GTTTGGGGAGAAGCTGAAACGCCAGAAATATGACATCACCACCCTCAGGAGCCGCATCGACCAG
GCCCAGAAGCACAGCAAGAAGGCCGGTGCCACCGCTAAGGGCAAAGTCGGTGGGCGCTGGAAGT
AAAGGGCCAGGAGGTCCCGCGGCAGAGACCCGGCCCCGGCGCACTCCAGCACCATCGCCCCAAC
ACTCGTGCCCAGGCTGCTTCTGGGGTTCCGGGACGCCGCCGGGGGTGGAGGGCCCCGCTGGAGC
ACCCCCTTGTCTCTGCCGTCCCAGTCCCCACCCTCTGGGGTCTGTGAATAAAGCCAGCAGACCC
CCCTCCA

hide sequence

RefSeq Acc Id:

XM_040283949 ⟹ XP_040139883

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	1,551,246 - 1,567,924 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013220866	(Get FASTA)	NCBI Sequence Viewer
	XP_013220867	(Get FASTA)	NCBI Sequence Viewer
	XP_013220868	(Get FASTA)	NCBI Sequence Viewer
	XP_013220873	(Get FASTA)	NCBI Sequence Viewer
	XP_013220876	(Get FASTA)	NCBI Sequence Viewer
	XP_021576217	(Get FASTA)	NCBI Sequence Viewer
	XP_040139883	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014849.2
	ENSSTOP00000024791.1
	ENSSTOP00000024804.1
	ENSSTOP00000026762.1
	ENSSTOP00000028386.1
	ENSSTOP00000028817.1
	ENSSTOP00000029054.1
	ENSSTOP00000029334.1
	ENSSTOP00000029912.1
	ENSSTOP00000031557.1
GenBank Protein	KAG3284387	(Get FASTA)	NCBI Sequence Viewer
	KAG3284388	(Get FASTA)	NCBI Sequence Viewer
	KAG3284389	(Get FASTA)	NCBI Sequence Viewer
	KAG3284390	(Get FASTA)	NCBI Sequence Viewer
	KAG3284391	(Get FASTA)	NCBI Sequence Viewer
	KAG3284392	(Get FASTA)	NCBI Sequence Viewer
	KAG3284393	(Get FASTA)	NCBI Sequence Viewer
	KAG3284394	(Get FASTA)	NCBI Sequence Viewer
	KAG3284395	(Get FASTA)	NCBI Sequence Viewer
	KAG3284396	(Get FASTA)	NCBI Sequence Viewer
	KAG3284397	(Get FASTA)	NCBI Sequence Viewer
	KAG3284398	(Get FASTA)	NCBI Sequence Viewer
	KAG3284399	(Get FASTA)	NCBI Sequence Viewer
	KAG3284400	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013220876 ⟸ XM_013365422
- Peptide Label:	isoform X5
- UniProtKB:	A0A287D719 (UniProtKB/TrEMBL), A0A287CU34 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEVEQVEEQYEEEEEAQEEEEEVQEERKPRPQLTAPKIPEGEKVDFDDIQKKRQNKDLMEL QALIDSHFEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLAEEKARREEEDAKR RAEDDLKKKKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLNIDHLGDDKLRDK AKELWETLYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKHSKKAGATAKGKVGGRWK hide sequence

RefSeq Acc Id:	XP_013220873 ⟸ XM_013365419
- Peptide Label:	isoform X4
- UniProtKB:	A0A287D5K9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEVEQVEEQYEEEEEAQEEEAEVQEEEEVQEERKPRPQLTAPKIPEGEKVDFDDIQKKRQN KDLMELQALIDSHFEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLAEEKARRE EEDAKRRAEDDLKKKKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLNIDHLGD DKLRDKAKELWETLYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKHSKKAGATAKGKVGGRW K hide sequence

RefSeq Acc Id:	XP_013220867 ⟸ XM_013365413
- Peptide Label:	isoform X2
- UniProtKB:	A0A287CZM5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEVEQVEEQYEEEEEAQEEEAEVQEEAPEVHEPEEVQEERKPRPQLTAPKIPEGEKVDFDD IQKKRQNKDLMELQALIDSHFEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLA EEKARREEEDAKRRAEDDLKKKKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPL NIDHLGDDKLRDKAKELWETLYQLETDKFEFGEKLKRQKYDIMTLRARVEMLAKFSKKAGATAK GKVGGRWK hide sequence

RefSeq Acc Id:	XP_013220866 ⟸ XM_013365412
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CZM5 (UniProtKB/TrEMBL), A0A287D5K9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEVEQVEEQYEEEEEAQEEEAEVQEEAPEVHEPEEVQEERKPRPQLTAPKIPEGEKVDFDD IQKKRQNKDLMELQALIDSHFEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLA EEKARREEEDAKRRAEDDLKKKKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPL NIDHLGDDKLRDKAKELWETLYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKHSKKAGATAK GKVGGRWK hide sequence

RefSeq Acc Id:	XP_013220868 ⟸ XM_013365414
- Peptide Label:	isoform X3
- UniProtKB:	A0A287D8L8 (UniProtKB/TrEMBL), A0A287D5K9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEVEQVEEQYEEEEEAQEEEEVQEEAPEVHEPEEVQEERKPRPQLTAPKIPEGEKVDFDDI QKKRQNKDLMELQALIDSHFEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLAE EKARREEEDAKRRAEDDLKKKKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLN IDHLGDDKLRDKAKELWETLYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKHSKKAGATAKG KVGGRWK hide sequence

RefSeq Acc Id:	XP_021576217 ⟸ XM_021720542
- Peptide Label:	isoform X7
- UniProtKB:	A0A287CU34 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEVEQVEEQYEEEEEVQEERKPRPQLTAPKIPEGEKVDFDDIQKKRQNKDLMELQALIDSH FEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLAEEKARREEEDAKRRAEDDLK KKKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLNIDHLGDDKLRDKAKELWET LYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKHSKKAGATAKGKVGGRWK hide sequence

RefSeq Acc Id:	XP_040139883 ⟸ XM_040283949
- Peptide Label:	isoform X6
- UniProtKB:	I3MRV4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000029912 ⟸ ENSSTOT00000033929

RefSeq Acc Id:

ENSSTOP00000029334 ⟸ ENSSTOT00000033747

RefSeq Acc Id:

ENSSTOP00000024804 ⟸ ENSSTOT00000032234

RefSeq Acc Id:

ENSSTOP00000014849 ⟸ ENSSTOT00000024894

RefSeq Acc Id:

ENSSTOP00000029054 ⟸ ENSSTOT00000034190

RefSeq Acc Id:

ENSSTOP00000031557 ⟸ ENSSTOT00000037411

RefSeq Acc Id:

ENSSTOP00000028386 ⟸ ENSSTOT00000042216

RefSeq Acc Id:

ENSSTOP00000026762 ⟸ ENSSTOT00000037648

RefSeq Acc Id:

ENSSTOP00000028817 ⟸ ENSSTOT00000041942

RefSeq Acc Id:

ENSSTOP00000024791 ⟸ ENSSTOT00000043285

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021402	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024894.2	UniProtKB/TrEMBL
	ENSSTOT00000032234.1	UniProtKB/TrEMBL
	ENSSTOT00000033747.1	UniProtKB/TrEMBL
	ENSSTOT00000033929.1	UniProtKB/TrEMBL
	ENSSTOT00000034190.1	UniProtKB/TrEMBL
	ENSSTOT00000037411.1	UniProtKB/TrEMBL
	ENSSTOT00000037648.1	UniProtKB/TrEMBL
	ENSSTOT00000041942.1	UniProtKB/TrEMBL
	ENSSTOT00000042216.1	UniProtKB/TrEMBL
	ENSSTOT00000043285.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.350	UniProtKB/TrEMBL
InterPro	TNNT	UniProtKB/TrEMBL
	Troponin	UniProtKB/TrEMBL
	Troponin_sf	UniProtKB/TrEMBL
NCBI Gene	Tnnt3	ENTREZGENE
PANTHER	PTHR11521	UniProtKB/TrEMBL
	PTHR11521:SF4	UniProtKB/TrEMBL
Pfam	Troponin	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90250	UniProtKB/TrEMBL
UniProt	A0A287CU34	ENTREZGENE, UniProtKB/TrEMBL
	A0A287CU52_ICTTR	UniProtKB/TrEMBL
	A0A287CZM5	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D471_ICTTR	UniProtKB/TrEMBL
	A0A287D5K9	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D680_ICTTR	UniProtKB/TrEMBL
	A0A287D719	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D8L8	ENTREZGENE, UniProtKB/TrEMBL
	A0A287DDC1_ICTTR	UniProtKB/TrEMBL
	I3MRV4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB