Pld3 (phospholipase D family member 3)

Gene: Pld3 (phospholipase D family member 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Pld3

Name:

phospholipase D family member 3

RGD ID:

12498376

Description:

ENCODES a protein that exhibits phospholipase D activity (ortholog); INVOLVED IN DNA metabolic process (inferred); myotube differentiation (inferred); regulation of cytokine production involved in inflammatory response (inferred); ASSOCIATED WITH Alzheimer's disease 19 (ortholog); Carpenter Syndrome 2 (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN early endosome membrane (inferred); endoplasmic reticulum membrane (inferred); Golgi membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

5'-3' exonuclease PLD3; phospholipase D family member 3, transcript variant X1; phospholipase D family member 3, transcript variant X2; phospholipase D family member 3, transcript variant X3; phospholipase D family member 3, transcript variant X4; phospholipase D3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,313,433 - 14,335,872 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	2,741,234 - 2,767,121 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	2,741,523 - 2,763,945 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease 19 (ISO)

Carpenter Syndrome 2 (ISO)

Charcot-Marie-Tooth disease (ISO)

Charcot-Marie-Tooth disease type 4 (ISO)

congenital hypoplastic anemia (ISO)

COVID-19 (ISO)

craniosynostosis (ISO)

Diamond-Blackfan anemia (ISO)

genetic disease (ISO)

maple syrup urine disease (ISO)

maturity-onset diabetes of the young type 1 (ISO)

spinocerebellar ataxia 46 (ISO)

type 2 diabetes mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA metabolic process (IEA)

myotube differentiation (IEA)

regulation of cytokine production involved in inflammatory response (IEA)

Cellular Component

early endosome membrane (IEA)

endoplasmic reticulum membrane (IEA)

Golgi membrane (IEA)

late endosome membrane (IEA)

lysosomal lumen (IEA)

lysosomal membrane (IEA)

membrane (IEA)

Molecular Function

catalytic activity (IEA)

nuclease activity (IEA)

phospholipase D activity (ISO)

protein binding (ISO)

single-stranded DNA 5'-3' DNA exonuclease activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Pld3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,313,433 - 14,335,872 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	2,741,234 - 2,767,121 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	2,741,523 - 2,763,945 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	40,348,695 - 40,378,485 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	40,348,456 - 40,389,472 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	40,854,602 - 40,884,392 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,546,447 - 45,576,230 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	45,557,388 - 45,576,229	NCBI
Celera	19	37,653,871 - 37,683,932 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	37,289,542 - 37,319,862 (+)	NCBI		HuRef
CHM1_1	19	40,854,014 - 40,884,087 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	43,169,216 - 43,199,111 (+)	NCBI		T2T-CHM13v2.0

Pld3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	27,231,090 - 27,252,511 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	27,231,425 - 27,252,643 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	27,531,367 - 27,553,229 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	27,532,000 - 27,553,218 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	28,317,037 - 28,338,131 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	27,240,778 - 27,261,872 (-)	NCBI		MGSCv36	mm8
Celera	7	22,114,471 - 22,135,478 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	15.92	NCBI

Pld3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	91,949,465 - 91,971,834 (-)	NCBI		GRCr8
mRatBN7.2	1	82,821,863 - 82,844,280 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	82,821,875 - 82,844,072 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	88,224,510 - 88,236,258 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	96,711,811 - 96,723,540 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	89,980,373 - 89,992,121 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	84,339,269 - 84,361,686 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	84,339,261 - 84,353,725 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	85,556,092 - 85,578,621 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	82,612,833 - 82,624,575 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	82,690,945 - 82,702,686 (-)	NCBI
Celera	1	77,234,697 - 77,246,439 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Pld3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	884,700 - 894,433 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955578	884,700 - 905,426 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	46,611,063 - 46,640,986 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	48,481,721 - 48,513,247 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	37,396,475 - 37,426,425 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	45,910,035 - 45,939,343 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	45,910,035 - 45,939,343 (+)	Ensembl	panpan1.1		panPan2

PLD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,305,146 - 113,322,705 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,305,445 - 113,312,632 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,707,088 - 112,724,610 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,903,509 - 113,921,055 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,901,791 - 113,920,989 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,462,768 - 113,480,306 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,095,268 - 113,112,804 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,089,264 - 114,106,809 (-)	NCBI		UU_Cfam_GSD_1.0

PLD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	48,645,417 - 48,669,430 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	48,645,347 - 48,667,394 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	44,511,277 - 44,516,457 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	34,804,574 - 34,833,975 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	34,804,500 - 34,836,333 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	12,898,435 - 12,929,234 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pld3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624925	361,418 - 382,172 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624925	361,306 - 382,172 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005336431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005336432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000006823 ⟹ ENSSTOP00000006100

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936661	2,741,234 - 2,767,121 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033047 ⟹ ENSSTOP00000026056

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936661	2,741,234 - 2,767,121 (+)	Ensembl

RefSeq Acc Id:

XM_005336430 ⟹ XP_005336487

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,313,477 - 14,335,872 (+)	NCBI
SpeTri2.0	NW_004936661	2,741,526 - 2,763,945 (+)	NCBI

Sequence:

show sequence

GCTCAGCCAATGAGAAGGGCGCAGGCCTGGCCCCCGCCTGCCCGCCGTCCAGCCGGAGCGAGCC
TGCGCTCAGGTGGGGCAGGAAGGCGGGGCTCCAGTCTAGAAGGTGCGTGTGGGGTCCCGCAGTG
GAAGGCAAGGAGTGCAGGTAATGCATGCCCACGGTACAAAAACTCACAAGTTCGGAGACCCTGA
CACACCCACCTTTCCGCCTGGGCTCAGCATATCCCCCAGCTGCAAAGCAAGATGAAGCCTAAAT
TGATGTACCAGGAGCTGAAGGTGCCTGTTGAGGAGCCAGCCAACGAGCTGCCCATGAATGAGAT
TGAGGCATGGAAGGCTGCTGAGAAGAAAGCCCGCTGGGTCCTGCTAGTCCTCATCCTGGCGGTG
GTGGGCTTCGGTGCCCTGATGACTCAGCTGTTTCTATGGGAATACGGGGACTTGCATCTCTTTG
GACCCAACCAGCGCCCAGCCCCCTGCTATGACCCCTGCGAAGCAGTGCTGGTGGAGAGCATTCC
TGAGGGCCTGGACTTCCCCAATGCCACCATGAGCAACCCCTCCACTAGCCAGGCCTGGCTGGGC
CTGCTCGCCGGTGCTCACAGCAGCCTGGACATCGCGTCCTTCTACTGGACCCTCACCAACAATG
ATACCCACACGCAGGAGCCCTCTGCCCAGCAGGGTGAGGAGGTCCTCCGGCAACTACAGACCCT
GGCACCTCGAGGGGTGAAGGTTCGCATCGCCGTGAGCAAGCCCAATGGGCCCCAGCCACAGGCG
GACCTGCAAACCCTGCTGCAGAGCGGTGCCCAGGTCCGCATGGTGGACATGCAGAAGCTGACCC
ATGGCGTCCTGCACACCAAGTTCTGGGTCGTGGATCAGACCCACTTCTACCTGGGCAGTGCCAA
CATGGACTGGCGCTCACTGACCCAGGTCAAGGAGCTGGGCATAGTGATGTACAACTGCAGCTGC
CTGGCTCGAGACTTGACCAAGATCTTCGAGGCCTACTGGTTCCTGGGCCAGGCGGGCAGCTCCA
TCCCATCCACCTGGCCCAGATCCTATGATACCCGCTACAATCAAGAGACACCAATGGAGATCTG
CCTCAATGGAACCCCTGCTCTGGCCTACCTGGCGAGCGCACCCCCACCCCTGTGTCCAAGTGGC
CGCACCCCAGACCTGAAGGCCCTGCTCAACGTGGTGGACAACGCCCGGAGTTTCATCTACATCG
CGGTCATGAACTACCTGCCCACCATGGAGTTCTCCCACCCGCGCAGGTTCTGGCCTGCCATCGA
CGATGGGCTGCGCCGGGCTGCGTATGAGCGGGGCGTCAAGGTGCGCCTGCTCATCAGCTGCTGG
GGACACTCTGAGCCATCCATGCGGTCCTTCCTGCTCTCCCTGGCTGCCCTGCGTGACAACCACA
CCCACTCCGACATCCAGGTGAAACTCTTTGTGGTCCCTGCGGATGAAGCCCAGGCTCGAATCCC
ATACGCCCGTGTCAACCACAACAAGTACATGGTGACTGAACGTGCCACCTACATTGGAACCTCC
AACTGGTCTGGCAGCTACTTCACGGAGACAGCGGGCACCTCGCTGCTGGTGACACAGAACGGGC
GCGGTGGCCTGCGCAGCCAGCTGGAGGCTGTTTTCCTGAGGGACTGGGACTCCCCTTATAGCCA
CGACCTGGACACTGCAGCGGACAGTGTGGGCAGTGCCTGTCGCCTGCTGTGAGGCCTGATCCAG
TGGACAGGCCGCAGCCTGCGAGGCCCCCATGGCCCCAGACGCTCTGGGTCCTGGTCCCTGTTCC
CGTGTCCCTGCTTCTGTCTGCCCCATCGTGGCTCCACAGGCTCTGTCCTGCGCTCCCGCCTCTA
CCTCCACCCCCAGTGGCCTGATACTACGGCCCCGGGACCTAGCAGAGCTGGGGGAGGGATCAGC
CCCCAAAGAAGTGGGGGTGCATGCTGGTCCTGGACCCCTGGCCCACCCCCCTTTTCAGGGCAAA
GAGGGCCCAAGATTATAATAACAAGTAAATAATGGTCTGTATAGCCTG

hide sequence

RefSeq Acc Id:

XM_005336431 ⟹ XP_005336488

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,326,646 - 14,335,872 (+)	NCBI
SpeTri2.0	NW_004936661	2,754,787 - 2,763,945 (+)	NCBI

Sequence:

show sequence

CTCCGCTCCTTACCTCCCGCCCCTGCTCAGCCTGTTGGGGCAGAAGCTGGGGCCCCGCGGAGGT
AGCTGCAGACGCCTGCCGATTCGGAGACCCTGACACACCCACCTTTCCGCCTGGGCTCAGCATA
TCCCCCAGCTGCAAAGCAAGATGAAGCCTAAATTGATGTACCAGGAGCTGAAGGTGCCTGTTGA
GGAGCCAGCCAACGAGCTGCCCATGAATGAGATTGAGGCATGGAAGGCTGCTGAGAAGAAAGCC
CGCTGGGTCCTGCTAGTCCTCATCCTGGCGGTGGTGGGCTTCGGTGCCCTGATGACTCAGCTGT
TTCTATGGGAATACGGGGACTTGCATCTCTTTGGACCCAACCAGCGCCCAGCCCCCTGCTATGA
CCCCTGCGAAGCAGTGCTGGTGGAGAGCATTCCTGAGGGCCTGGACTTCCCCAATGCCACCATG
AGCAACCCCTCCACTAGCCAGGCCTGGCTGGGCCTGCTCGCCGGTGCTCACAGCAGCCTGGACA
TCGCGTCCTTCTACTGGACCCTCACCAACAATGATACCCACACGCAGGAGCCCTCTGCCCAGCA
GGGTGAGGAGGTCCTCCGGCAACTACAGACCCTGGCACCTCGAGGGGTGAAGGTTCGCATCGCC
GTGAGCAAGCCCAATGGGCCCCAGCCACAGGCGGACCTGCAAACCCTGCTGCAGAGCGGTGCCC
AGGTCCGCATGGTGGACATGCAGAAGCTGACCCATGGCGTCCTGCACACCAAGTTCTGGGTCGT
GGATCAGACCCACTTCTACCTGGGCAGTGCCAACATGGACTGGCGCTCACTGACCCAGGTCAAG
GAGCTGGGCATAGTGATGTACAACTGCAGCTGCCTGGCTCGAGACTTGACCAAGATCTTCGAGG
CCTACTGGTTCCTGGGCCAGGCGGGCAGCTCCATCCCATCCACCTGGCCCAGATCCTATGATAC
CCGCTACAATCAAGAGACACCAATGGAGATCTGCCTCAATGGAACCCCTGCTCTGGCCTACCTG
GCGAGCGCACCCCCACCCCTGTGTCCAAGTGGCCGCACCCCAGACCTGAAGGCCCTGCTCAACG
TGGTGGACAACGCCCGGAGTTTCATCTACATCGCGGTCATGAACTACCTGCCCACCATGGAGTT
CTCCCACCCGCGCAGGTTCTGGCCTGCCATCGACGATGGGCTGCGCCGGGCTGCGTATGAGCGG
GGCGTCAAGGTGCGCCTGCTCATCAGCTGCTGGGGACACTCTGAGCCATCCATGCGGTCCTTCC
TGCTCTCCCTGGCTGCCCTGCGTGACAACCACACCCACTCCGACATCCAGGTGAAACTCTTTGT
GGTCCCTGCGGATGAAGCCCAGGCTCGAATCCCATACGCCCGTGTCAACCACAACAAGTACATG
GTGACTGAACGTGCCACCTACATTGGAACCTCCAACTGGTCTGGCAGCTACTTCACGGAGACAG
CGGGCACCTCGCTGCTGGTGACACAGAACGGGCGCGGTGGCCTGCGCAGCCAGCTGGAGGCTGT
TTTCCTGAGGGACTGGGACTCCCCTTATAGCCACGACCTGGACACTGCAGCGGACAGTGTGGGC
AGTGCCTGTCGCCTGCTGTGAGGCCTGATCCAGTGGACAGGCCGCAGCCTGCGAGGCCCCCATG
GCCCCAGACGCTCTGGGTCCTGGTCCCTGTTCCCGTGTCCCTGCTTCTGTCTGCCCCATCGTGG
CTCCACAGGCTCTGTCCTGCGCTCCCGCCTCTACCTCCACCCCCAGTGGCCTGATACTACGGCC
CCGGGACCTAGCAGAGCTGGGGGAGGGATCAGCCCCCAAAGAAGTGGGGGTGCATGCTGGTCCT
GGACCCCTGGCCCACCCCCCTTTTCAGGGCAAAGAGGGCCCAAGATTATAATAACAAGTAAATA
ATGGTCTGTATAGCCTG

hide sequence

RefSeq Acc Id:

XM_005336432 ⟹ XP_005336489

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,313,457 - 14,335,872 (+)	NCBI
SpeTri2.0	NW_004936661	2,741,523 - 2,763,945 (+)	NCBI

Sequence:

show sequence

GGAGCTCAGCCAATGAGAAGGGCGCAGGCCTGGCCCCCGCCTGCCCGCCGTCCAGCCGGAGCGA
GCCTGCGCTCAGGTGGGGCAGGAAGGCGGGGCTCCAGTCTAGAAGGTGCGTGTGGGGTCCCGCA
GTGGAAGGCAAGGAGTGCAGTTCGGAGACCCTGACACACCCACCTTTCCGCCTGGGCTCAGCAT
ATCCCCCAGCTGCAAAGCAAGATGAAGCCTAAATTGATGTACCAGGAGCTGAAGGTGCCTGTTG
AGGAGCCAGCCAACGAGCTGCCCATGAATGAGATTGAGGCATGGAAGGCTGCTGAGAAGAAAGC
CCGCTGGGTCCTGCTAGTCCTCATCCTGGCGGTGGTGGGCTTCGGTGCCCTGATGACTCAGCTG
TTTCTATGGGAATACGGGGACTTGCATCTCTTTGGACCCAACCAGCGCCCAGCCCCCTGCTATG
ACCCCTGCGAAGCAGTGCTGGTGGAGAGCATTCCTGAGGGCCTGGACTTCCCCAATGCCACCAT
GAGCAACCCCTCCACTAGCCAGGCCTGGCTGGGCCTGCTCGCCGGTGCTCACAGCAGCCTGGAC
ATCGCGTCCTTCTACTGGACCCTCACCAACAATGATACCCACACGCAGGAGCCCTCTGCCCAGC
AGGGTGAGGAGGTCCTCCGGCAACTACAGACCCTGGCACCTCGAGGGGTGAAGGTTCGCATCGC
CGTGAGCAAGCCCAATGGGCCCCAGCCACAGGCGGACCTGCAAACCCTGCTGCAGAGCGGTGCC
CAGGTCCGCATGGTGGACATGCAGAAGCTGACCCATGGCGTCCTGCACACCAAGTTCTGGGTCG
TGGATCAGACCCACTTCTACCTGGGCAGTGCCAACATGGACTGGCGCTCACTGACCCAGGTCAA
GGAGCTGGGCATAGTGATGTACAACTGCAGCTGCCTGGCTCGAGACTTGACCAAGATCTTCGAG
GCCTACTGGTTCCTGGGCCAGGCGGGCAGCTCCATCCCATCCACCTGGCCCAGATCCTATGATA
CCCGCTACAATCAAGAGACACCAATGGAGATCTGCCTCAATGGAACCCCTGCTCTGGCCTACCT
GGCGAGCGCACCCCCACCCCTGTGTCCAAGTGGCCGCACCCCAGACCTGAAGGCCCTGCTCAAC
GTGGTGGACAACGCCCGGAGTTTCATCTACATCGCGGTCATGAACTACCTGCCCACCATGGAGT
TCTCCCACCCGCGCAGGTTCTGGCCTGCCATCGACGATGGGCTGCGCCGGGCTGCGTATGAGCG
GGGCGTCAAGGTGCGCCTGCTCATCAGCTGCTGGGGACACTCTGAGCCATCCATGCGGTCCTTC
CTGCTCTCCCTGGCTGCCCTGCGTGACAACCACACCCACTCCGACATCCAGGTGAAACTCTTTG
TGGTCCCTGCGGATGAAGCCCAGGCTCGAATCCCATACGCCCGTGTCAACCACAACAAGTACAT
GGTGACTGAACGTGCCACCTACATTGGAACCTCCAACTGGTCTGGCAGCTACTTCACGGAGACA
GCGGGCACCTCGCTGCTGGTGACACAGAACGGGCGCGGTGGCCTGCGCAGCCAGCTGGAGGCTG
TTTTCCTGAGGGACTGGGACTCCCCTTATAGCCACGACCTGGACACTGCAGCGGACAGTGTGGG
CAGTGCCTGTCGCCTGCTGTGAGGCCTGATCCAGTGGACAGGCCGCAGCCTGCGAGGCCCCCAT
GGCCCCAGACGCTCTGGGTCCTGGTCCCTGTTCCCGTGTCCCTGCTTCTGTCTGCCCCATCGTG
GCTCCACAGGCTCTGTCCTGCGCTCCCGCCTCTACCTCCACCCCCAGTGGCCTGATACTACGGC
CCCGGGACCTAGCAGAGCTGGGGGAGGGATCAGCCCCCAAAGAAGTGGGGGTGCATGCTGGTCC
TGGACCCCTGGCCCACCCCCCTTTTCAGGGCAAAGAGGGCCCAAGATTATAATAACAAGTAAAT
AATGGTCTGTATAGCCTG

hide sequence

RefSeq Acc Id:

XM_040278865 ⟹ XP_040134799

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,313,532 - 14,335,872 (+)	NCBI

RefSeq Acc Id:

XM_040278866 ⟹ XP_040134800

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,314,190 - 14,335,872 (+)	NCBI

RefSeq Acc Id:

XM_040278867 ⟹ XP_040134801

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,326,793 - 14,335,872 (+)	NCBI

RefSeq Acc Id:

XM_040278868 ⟹ XP_040134802

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,313,544 - 14,335,872 (+)	NCBI

RefSeq Acc Id:

XM_040278869 ⟹ XP_040134803

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,313,433 - 14,335,872 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005336487	(Get FASTA)	NCBI Sequence Viewer
	XP_005336488	(Get FASTA)	NCBI Sequence Viewer
	XP_005336489	(Get FASTA)	NCBI Sequence Viewer
	XP_040134799	(Get FASTA)	NCBI Sequence Viewer
	XP_040134800	(Get FASTA)	NCBI Sequence Viewer
	XP_040134801	(Get FASTA)	NCBI Sequence Viewer
	XP_040134802	(Get FASTA)	NCBI Sequence Viewer
	XP_040134803	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006100.2
	ENSSTOP00000026056.1
GenBank Protein	KAG3256051	(Get FASTA)	NCBI Sequence Viewer
	KAG3256052	(Get FASTA)	NCBI Sequence Viewer
	KAG3256053	(Get FASTA)	NCBI Sequence Viewer
	KAG3256054	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005336489 ⟸ XM_005336432

- UniProtKB:

I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKPKLMYQELKVPVEEPANELPMNEIEAWKAAEKKARWVLLVLILAVVGFGALMTQLFLWEYGD
LHLFGPNQRPAPCYDPCEAVLVESIPEGLDFPNATMSNPSTSQAWLGLLAGAHSSLDIASFYWT
LTNNDTHTQEPSAQQGEEVLRQLQTLAPRGVKVRIAVSKPNGPQPQADLQTLLQSGAQVRMVDM
QKLTHGVLHTKFWVVDQTHFYLGSANMDWRSLTQVKELGIVMYNCSCLARDLTKIFEAYWFLGQ
AGSSIPSTWPRSYDTRYNQETPMEICLNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDNARS
FIYIAVMNYLPTMEFSHPRRFWPAIDDGLRRAAYERGVKVRLLISCWGHSEPSMRSFLLSLAAL
RDNHTHSDIQVKLFVVPADEAQARIPYARVNHNKYMVTERATYIGTSNWSGSYFTETAGTSLLV
TQNGRGGLRSQLEAVFLRDWDSPYSHDLDTAADSVGSACRLL

hide sequence

RefSeq Acc Id:

XP_005336487 ⟸ XM_005336430

- UniProtKB:

I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKPKLMYQELKVPVEEPANELPMNEIEAWKAAEKKARWVLLVLILAVVGFGALMTQLFLWEYGD
LHLFGPNQRPAPCYDPCEAVLVESIPEGLDFPNATMSNPSTSQAWLGLLAGAHSSLDIASFYWT
LTNNDTHTQEPSAQQGEEVLRQLQTLAPRGVKVRIAVSKPNGPQPQADLQTLLQSGAQVRMVDM
QKLTHGVLHTKFWVVDQTHFYLGSANMDWRSLTQVKELGIVMYNCSCLARDLTKIFEAYWFLGQ
AGSSIPSTWPRSYDTRYNQETPMEICLNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDNARS
FIYIAVMNYLPTMEFSHPRRFWPAIDDGLRRAAYERGVKVRLLISCWGHSEPSMRSFLLSLAAL
RDNHTHSDIQVKLFVVPADEAQARIPYARVNHNKYMVTERATYIGTSNWSGSYFTETAGTSLLV
TQNGRGGLRSQLEAVFLRDWDSPYSHDLDTAADSVGSACRLL

hide sequence

RefSeq Acc Id:

XP_005336488 ⟸ XM_005336431

- UniProtKB:

I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKPKLMYQELKVPVEEPANELPMNEIEAWKAAEKKARWVLLVLILAVVGFGALMTQLFLWEYGD
LHLFGPNQRPAPCYDPCEAVLVESIPEGLDFPNATMSNPSTSQAWLGLLAGAHSSLDIASFYWT
LTNNDTHTQEPSAQQGEEVLRQLQTLAPRGVKVRIAVSKPNGPQPQADLQTLLQSGAQVRMVDM
QKLTHGVLHTKFWVVDQTHFYLGSANMDWRSLTQVKELGIVMYNCSCLARDLTKIFEAYWFLGQ
AGSSIPSTWPRSYDTRYNQETPMEICLNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDNARS
FIYIAVMNYLPTMEFSHPRRFWPAIDDGLRRAAYERGVKVRLLISCWGHSEPSMRSFLLSLAAL
RDNHTHSDIQVKLFVVPADEAQARIPYARVNHNKYMVTERATYIGTSNWSGSYFTETAGTSLLV
TQNGRGGLRSQLEAVFLRDWDSPYSHDLDTAADSVGSACRLL

hide sequence

RefSeq Acc Id:	XP_040134803 ⟸ XM_040278869
- UniProtKB:	I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134799 ⟸ XM_040278865
- UniProtKB:	I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134802 ⟸ XM_040278868
- UniProtKB:	I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134800 ⟸ XM_040278866
- UniProtKB:	I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134801 ⟸ XM_040278867
- UniProtKB:	I3M8L5 (UniProtKB/TrEMBL), A0A287CXP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000026056 ⟸ ENSSTOT00000033047

RefSeq Acc Id:

ENSSTOP00000006100 ⟸ ENSSTOT00000006823

Protein Domains

PLD phosphodiesterase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006823	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006823.3	UniProtKB/TrEMBL
	ENSSTOT00000033047.1	UniProtKB/TrEMBL
Gene3D-CATH	Endonuclease Chain A	UniProtKB/TrEMBL
InterPro	PLDc_3	UniProtKB/TrEMBL
	PLipase_D/transphosphatidylase	UniProtKB/TrEMBL
NCBI Gene	Pld3	ENTREZGENE
PANTHER	5'-3' EXONUCLEASE PLD3	UniProtKB/TrEMBL
	PHOSPHOLIPASE D - RELATED	UniProtKB/TrEMBL
Pfam	PLDc_3	UniProtKB/TrEMBL
PROSITE	PLD	UniProtKB/TrEMBL
SMART	PLDc	UniProtKB/TrEMBL
Superfamily-SCOP	Phospholipase D/nuclease	UniProtKB/TrEMBL
UniProt	A0A287CXP5	ENTREZGENE, UniProtKB/TrEMBL
	I3M8L5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM