Hnrnpd (heterogeneous nuclear ribonucleoprotein D) - Rat Genome Database

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Gene: Hnrnpd (heterogeneous nuclear ribonucleoprotein D) Ictidomys tridecemlineatus
Analyze
Symbol: Hnrnpd
Name: heterogeneous nuclear ribonucleoprotein D
RGD ID: 12492132
Description: ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); minor groove of adenine-thymine-rich DNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); mCRD-mediated mRNA stability complex (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein D0
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,934,255 - 5,953,306 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367382,096,370 - 2,113,604 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367382,096,370 - 2,115,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hnrnpd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,934,255 - 5,953,306 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367382,096,370 - 2,113,604 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367382,096,370 - 2,115,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38482,352,498 - 82,373,991 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl482,352,498 - 82,374,503 (-)EnsemblGRCh38hg38GRCh38
GRCh37483,273,651 - 83,295,144 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36483,493,491 - 83,514,173 (-)NCBINCBI36Build 36hg18NCBI36
Build 34483,631,645 - 83,652,328NCBI
Celera480,565,274 - 80,585,965 (-)NCBICelera
Cytogenetic Map4q21.22NCBI
HuRef479,014,546 - 79,035,236 (-)NCBIHuRef
CHM1_1483,250,972 - 83,271,667 (-)NCBICHM1_1
T2T-CHM13v2.0485,681,761 - 85,703,272 (-)NCBIT2T-CHM13v2.0
Hnrnpd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,103,794 - 100,126,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5100,103,794 - 100,126,797 (-)EnsemblGRCm39 Ensembl
GRCm38599,955,935 - 99,979,130 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl599,955,935 - 99,978,938 (-)EnsemblGRCm38mm10GRCm38
MGSCv375100,384,955 - 100,407,957 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365100,201,309 - 100,218,851 (-)NCBIMGSCv36mm8
Celera597,269,494 - 97,292,491 (-)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.46NCBI
Hnrnpd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,918,630 - 9,938,072 (+)NCBIGRCr8
mRatBN7.2149,615,375 - 9,638,975 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,615,479 - 9,633,786 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx149,586,928 - 9,605,215 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,886,767 - 10,905,061 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,583,376 - 9,601,670 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01411,256,163 - 11,274,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1411,256,268 - 11,274,578 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01411,200,186 - 11,218,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,917,674 - 10,935,989 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11410,917,909 - 10,935,760 (+)NCBI
Celera149,716,133 - 9,734,433 (+)NCBICelera
Cytogenetic Map14p22NCBI
Hnrnpd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554336,454,454 - 6,469,904 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554336,452,931 - 6,470,209 (-)NCBIChiLan1.0ChiLan1.0
HNRNPD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2347,690,517 - 47,713,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1447,882,558 - 47,902,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0441,825,518 - 41,846,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1447,675,382 - 47,696,894 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl447,676,599 - 47,696,894 (+)Ensemblpanpan1.1panPan2
HNRNPD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,323,444 - 6,341,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,323,469 - 6,341,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3235,539,639 - 35,557,456 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0326,346,646 - 6,364,470 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl326,346,649 - 6,364,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1326,376,955 - 6,394,761 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0326,283,881 - 6,301,733 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03233,661,515 - 33,679,335 (+)NCBIUU_Cfam_GSD_1.0
HNRNPD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8135,844,487 - 135,862,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18135,844,492 - 135,862,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28145,204,594 - 145,218,439 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1730,729,697 - 30,749,793 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl730,731,175 - 30,749,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660379,284,119 - 9,304,361 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247578,531,601 - 8,549,835 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247578,532,373 - 8,549,840 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000013966   ⟹   ENSSTOP00000012515
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367382,096,370 - 2,113,604 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036762   ⟹   ENSSTOP00000025152
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367382,096,370 - 2,113,604 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000041303   ⟹   ENSSTOP00000032584
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367382,096,370 - 2,113,604 (+)Ensembl
RefSeq Acc Id: XM_040292236   ⟹   XP_040148170
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244052855,936,415 - 5,952,278 (+)NCBI
RefSeq Acc Id: XM_040292237   ⟹   XP_040148171
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244052855,934,255 - 5,953,306 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040148170 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148171 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012515.3
  ENSSTOP00000025152.1
  ENSSTOP00000032584.1
GenBank Protein KAG3276344 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040148171   ⟸   XM_040292237
- Peptide Label: isoform X2
- UniProtKB: I3MM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040148170   ⟸   XM_040292236
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000032584   ⟸   ENSSTOT00000041303
RefSeq Acc Id: ENSSTOP00000025152   ⟸   ENSSTOT00000036762
RefSeq Acc Id: ENSSTOP00000012515   ⟸   ENSSTOT00000013966
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013970 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013966.3 UniProtKB/TrEMBL
  ENSSTOT00000036762.1 UniProtKB/TrEMBL
  ENSSTOT00000041303.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro CARG-binding_factor_N UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Hnrnpd ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 UniProtKB/TrEMBL
  RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN UniProtKB/TrEMBL
Pfam CBFNT UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A287CV21_ICTTR UniProtKB/TrEMBL
  A0A287DGB4_ICTTR UniProtKB/TrEMBL
  I3MM13 ENTREZGENE, UniProtKB/TrEMBL