Hr (HR lysine demethylase and nuclear receptor corepressor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Hr (HR lysine demethylase and nuclear receptor corepressor) Ictidomys tridecemlineatus
Analyze
Symbol: Hr
Name: HR lysine demethylase and nuclear receptor corepressor
RGD ID: 12486025
Description: ENCODES a protein that exhibits histone deacetylase binding (ortholog); nuclear thyroid hormone receptor binding (ortholog); nuclear vitamin D receptor binding (ortholog); INVOLVED IN negative regulation of DNA-binding transcription factor activity (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH alopecia (ortholog); alopecia universalis (ortholog); atrichia with papular lesions (ortholog); FOUND IN histone deacetylase complex (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hair growth associated; HR, lysine demethylase and nuclear receptor corepressor; HR, lysine demethylase and nuclear receptor corepressor, transcript variant X1; HR, lysine demethylase and nuclear receptor corepressor, transcript variant X2; lysine-specific demethylase hairless
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,612,526 - 12,634,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,936,220 - 5,954,974 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,936,431 - 5,954,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,612,526 - 12,634,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,936,220 - 5,954,974 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,936,431 - 5,954,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,114,419 - 22,131,052 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,114,419 - 22,133,384 (-)EnsemblGRCh38hg38GRCh38
GRCh37821,971,932 - 21,988,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,027,877 - 22,043,975 (-)NCBINCBI36Build 36hg18NCBI36
Build 34822,028,526 - 22,045,326NCBI
Celera820,934,236 - 20,950,880 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,514,477 - 20,541,503 (-)NCBIHuRef
CHM1_1822,173,616 - 22,190,245 (-)NCBICHM1_1
T2T-CHM13v2.0822,388,371 - 22,405,000 (-)NCBIT2T-CHM13v2.0
Hr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,789,644 - 70,810,988 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,789,652 - 70,810,988 (+)EnsemblGRCm39 Ensembl
GRCm381470,554,056 - 70,573,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,552,212 - 70,573,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371470,953,863 - 70,973,350 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,289,136 - 69,308,623 (+)NCBIMGSCv36mm8
Celera1468,095,776 - 68,115,052 (+)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.32NCBI
Hr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,036,540 - 52,056,019 (+)NCBIGRCr8
mRatBN7.21545,626,835 - 45,646,313 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,626,835 - 45,646,313 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,744,700 - 49,764,175 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,856,205 - 50,875,680 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,715,507 - 47,734,986 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,241,801 - 52,261,276 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,241,801 - 52,261,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,967,613 - 55,984,797 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,957,053 - 50,972,842 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,972,821 - 50,988,623 (+)NCBI
Celera1545,305,217 - 45,324,692 (+)NCBICelera
Cytogenetic Map15p11NCBI
Hr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,605,510 - 45,624,402 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,605,870 - 45,624,386 (-)NCBIChiLan1.0ChiLan1.0
HR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,616,243 - 40,630,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,341,438 - 16,357,572 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,359,348 - 21,378,315 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,298,709 - 18,316,151 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,298,709 - 18,316,151 (-)Ensemblpanpan1.1panPan2
HR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,120,566 - 35,136,560 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,119,784 - 35,135,545 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,710,085 - 35,727,556 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,332,063 - 35,349,535 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,333,417 - 35,347,559 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,277,299 - 35,294,762 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,131,873 - 35,149,314 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,287,349 - 35,304,802 (+)NCBIUU_Cfam_GSD_1.0
HR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,386,903 - 6,407,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,386,900 - 6,404,968 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,822,598 - 6,840,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,183,797 - 20,207,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,183,677 - 20,198,700 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605222,028,581 - 22,052,527 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,699,400 - 17,715,482 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,699,357 - 17,719,188 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000016515   ⟹   ENSSTOP00000014779
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365555,936,220 - 5,954,974 (-)Ensembl
RefSeq Acc Id: XM_005329303   ⟹   XP_005329360
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494312,615,632 - 12,634,082 (+)NCBI
SpeTri2.0NW_0049365555,936,431 - 5,954,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360343   ⟹   XP_013215797
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494312,615,632 - 12,634,082 (+)NCBI
SpeTri2.0NW_0049365555,936,431 - 5,954,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293157   ⟹   XP_040149091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494312,612,526 - 12,634,082 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005329360 (Get FASTA)   NCBI Sequence Viewer  
  XP_013215797 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149091 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014779.2
GenBank Protein KAG3294415 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294416 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329360   ⟸   XM_005329303
- Peptide Label: isoform X2
- UniProtKB: I3MRP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215797   ⟸   XM_013360343
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040149091   ⟸   XM_040293157
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000014779   ⟸   ENSSTOT00000016515
Protein Domains
JmjC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016512 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016515.3 UniProtKB/TrEMBL
Gene3D-CATH Cupin UniProtKB/TrEMBL
InterPro JHDM2-like UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
NCBI Gene Hr ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE HAIRLESS UniProtKB/TrEMBL
  PTHR12549 UniProtKB/TrEMBL
Pfam JmjC UniProtKB/TrEMBL
PROSITE JMJC UniProtKB/TrEMBL
SMART JmjC UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt I3MRP4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Hr  HR lysine demethylase and nuclear receptor corepressor    HR, lysine demethylase and nuclear receptor corepressor  Symbol and/or name change 5135510 APPROVED