Cep290 (centrosomal protein 290) - Rat Genome Database

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Gene: Cep290 (centrosomal protein 290) Ictidomys tridecemlineatus
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Symbol: Cep290
Name: centrosomal protein 290
RGD ID: 12485922
Description: ENCODES a protein that exhibits microtubule minus-end binding (ortholog); INVOLVED IN ciliary basal body-plasma membrane docking (ortholog); ciliary transition zone assembly (ortholog); determination of left/right symmetry (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 14 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); MKS complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 290 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494530,930,005 - 31,012,005 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365075,221,910 - 5,305,422 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365075,223,756 - 5,305,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cep290
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494530,930,005 - 31,012,005 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365075,221,910 - 5,305,422 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365075,223,756 - 5,305,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP290
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381288,049,016 - 88,142,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1288,049,016 - 88,142,099 (-)EnsemblGRCh38hg38GRCh38
GRCh371288,442,793 - 88,535,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361286,966,921 - 87,060,124 (-)NCBINCBI36Build 36hg18NCBI36
Celera1288,110,804 - 88,204,074 (-)NCBICelera
Cytogenetic Map12q21.32NCBI
HuRef1285,509,678 - 85,602,945 (-)NCBIHuRef
CHM1_11288,407,817 - 88,501,072 (-)NCBICHM1_1
T2T-CHM13v2.01288,030,894 - 88,124,030 (-)NCBIT2T-CHM13v2.0
Cep290
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910100,323,410 - 100,409,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10100,323,420 - 100,410,702 (+)EnsemblGRCm39 Ensembl
GRCm3810100,487,548 - 100,575,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10100,487,558 - 100,574,840 (+)EnsemblGRCm38mm10GRCm38
MGSCv371099,950,923 - 100,036,289 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera10102,420,230 - 102,505,600 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1051.48NCBI
Cep290
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8737,196,765 - 37,285,955 (+)NCBIGRCr8
mRatBN7.2735,310,071 - 35,399,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl735,310,199 - 35,399,392 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx737,297,393 - 37,386,598 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0739,470,755 - 39,558,466 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0739,203,959 - 39,291,670 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0740,217,269 - 40,306,327 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl740,217,269 - 40,306,327 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0740,256,312 - 40,344,956 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4738,138,545 - 38,228,716 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1738,159,544 - 38,248,364 (+)NCBI
Celera732,302,859 - 32,391,640 (+)NCBICelera
Cytogenetic Map7q21NCBI
Cep290
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540525,533,525 - 25,606,212 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540525,533,037 - 25,607,021 (-)NCBIChiLan1.0ChiLan1.0
CEP290
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21096,088,993 - 96,181,939 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11296,084,936 - 96,178,417 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01285,589,911 - 85,683,365 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11288,896,146 - 88,988,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1288,896,146 - 88,988,044 (-)Ensemblpanpan1.1panPan2
CEP290
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11529,194,449 - 29,281,351 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1529,194,983 - 29,280,429 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1529,645,468 - 29,732,097 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01529,831,711 - 29,918,554 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1529,832,248 - 29,918,662 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11529,150,640 - 29,237,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01529,209,981 - 29,296,506 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01529,492,991 - 29,579,893 (-)NCBIUU_Cfam_GSD_1.0
CEP290
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl594,384,415 - 94,474,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1594,384,397 - 94,474,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2599,071,072 - 99,161,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP290
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11183,420,911 - 83,515,466 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1183,412,379 - 83,514,596 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037161,755,432 - 161,850,040 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep290
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248377,054,813 - 7,138,097 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248377,054,659 - 7,138,840 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004505   ⟹   ENSSTOP00000004045
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365075,221,910 - 5,305,422 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000022848   ⟹   ENSSTOP00000017479
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365075,221,910 - 5,305,422 (-)Ensembl
RefSeq Acc Id: XM_005324421   ⟹   XP_005324478
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494530,930,007 - 31,012,005 (+)NCBI
SpeTri2.0NW_0049365075,223,756 - 5,305,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280187   ⟹   XP_040136121
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494530,930,337 - 31,011,616 (+)NCBI
RefSeq Acc Id: XM_040280194   ⟹   XP_040136128
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494530,930,007 - 31,012,005 (+)NCBI
RefSeq Acc Id: XM_040280196   ⟹   XP_040136130
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494530,930,005 - 30,998,773 (+)NCBI
RefSeq Acc Id: XP_005324478   ⟸   XM_005324421
- Peptide Label: isoform X1
- UniProtKB: I3M4D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136130   ⟸   XM_040280196
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040136128   ⟸   XM_040280194
- Peptide Label: isoform X2
- UniProtKB: I3MZD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136121   ⟸   XM_040280187
- Peptide Label: isoform X1
- UniProtKB: I3M4D6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000004045   ⟸   ENSSTOT00000004505
RefSeq Acc Id: ENSSTOP00000017479   ⟸   ENSSTOT00000022848

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004444 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004505.3 UniProtKB/TrEMBL
  ENSSTOT00000022848.2 UniProtKB/TrEMBL
InterPro Cep209_CC5 UniProtKB/TrEMBL
  Cep290 UniProtKB/TrEMBL
NCBI Gene Cep290 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 290 KDA UniProtKB/TrEMBL
  PTHR18879 UniProtKB/TrEMBL
Pfam CEP209_CC5 UniProtKB/TrEMBL
UniProt I3M4D6 ENTREZGENE, UniProtKB/TrEMBL
  I3MZD3 ENTREZGENE, UniProtKB/TrEMBL