Psmc1 (proteasome 26S subunit, ATPase 1) - Rat Genome Database

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Gene: Psmc1 (proteasome 26S subunit, ATPase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Psmc1
Name: proteasome 26S subunit, ATPase 1
RGD ID: 12484909
Description: ENCODES a protein that exhibits TBP-class protein binding (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH achondrogenesis type IA (ortholog); genetic disease (ortholog); neurodevelopmental disorder with poor growth, spastic tetraplegia, and hearing loss (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S protease regulatory subunit 4; 26S proteasome regulatory subunit 4; proteasome 26S subunit, ATPase 1, transcript variant X1; proteasome 26S subunit, ATPase 1, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,600,035 - 14,613,399 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,455,461 - 17,469,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,455,612 - 17,468,933 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psmc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,600,035 - 14,613,399 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,455,461 - 17,469,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,455,612 - 17,468,933 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381490,256,553 - 90,275,429 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1490,256,527 - 90,275,429 (+)EnsemblGRCh38hg38GRCh38
GRCh371490,722,897 - 90,741,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,792,647 - 89,808,719 (+)NCBINCBI36Build 36hg18NCBI36
Build 341489,792,646 - 89,808,719NCBI
Celera1470,770,035 - 70,786,113 (+)NCBICelera
Cytogenetic Map14q32.11NCBI
HuRef1470,897,288 - 70,913,368 (+)NCBIHuRef
CHM1_11490,661,102 - 90,677,177 (+)NCBICHM1_1
T2T-CHM13v2.01484,478,491 - 84,499,697 (+)NCBIT2T-CHM13v2.0
Psmc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,076,461 - 100,089,623 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,076,413 - 100,089,664 (+)EnsemblGRCm39 Ensembl
GRCm3812100,110,202 - 100,123,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,110,154 - 100,123,405 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712101,348,412 - 101,361,574 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612100,511,252 - 100,524,414 (+)NCBIMGSCv36mm8
Celera12101,336,798 - 101,349,996 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1250.43NCBI
Psmc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,122,497 - 125,134,859 (+)NCBIGRCr8
mRatBN7.26119,392,833 - 119,405,233 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6119,392,855 - 119,410,123 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6119,555,520 - 119,567,890 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06119,852,325 - 119,864,695 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06119,187,189 - 119,199,560 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06124,123,283 - 124,135,644 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,123,228 - 124,135,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06133,350,578 - 133,362,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46124,380,976 - 124,393,338 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16124,384,722 - 124,397,084 (+)NCBI
Celera6116,922,860 - 116,935,222 (+)NCBICelera
Cytogenetic Map6q32NCBI
Psmc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,704,691 - 12,721,050 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,705,328 - 12,721,050 (+)NCBIChiLan1.0ChiLan1.0
PSMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21591,400,672 - 91,416,861 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11490,617,193 - 90,633,367 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01470,873,846 - 70,889,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11490,225,405 - 90,241,638 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1490,225,405 - 90,241,641 (+)Ensemblpanpan1.1panPan2
PSMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1861,272,363 - 61,285,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl861,272,363 - 61,285,886 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha860,851,941 - 60,865,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0861,544,550 - 61,558,080 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl861,544,577 - 61,558,051 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1861,225,967 - 61,239,658 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0861,274,899 - 61,288,618 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0861,603,196 - 61,616,721 (+)NCBIUU_Cfam_GSD_1.0
PSMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,027,921 - 112,041,489 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17112,027,904 - 112,041,360 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,594,314 - 118,607,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12467,979,449 - 67,995,103 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605355,265,330 - 55,281,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473412,153,919 - 12,174,650 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000001655   ⟹   ENSSTOP00000001484
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648817,458,901 - 17,468,718 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000039865   ⟹   ENSSTOP00000031658
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648817,455,461 - 17,469,527 (+)Ensembl
RefSeq Acc Id: XM_005321315   ⟹   XP_005321372
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864014,600,035 - 14,613,399 (-)NCBI
SpeTri2.0NW_00493648817,455,612 - 17,468,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021723837   ⟹   XP_021579512
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864014,600,035 - 14,612,829 (-)NCBI
SpeTri2.0NW_00493648817,456,141 - 17,468,930 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321372 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001484.3
  ENSSTOP00000031658.1
GenBank Protein KAG3260526 (Get FASTA)   NCBI Sequence Viewer  
  KAG3260527 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321372   ⟸   XM_005321315
- Peptide Label: isoform X1
- UniProtKB: A0A287DDP1 (UniProtKB/TrEMBL),   I3LZ00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579512   ⟸   XM_021723837
- Peptide Label: isoform X2
- UniProtKB: I3LZ00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000001484   ⟸   ENSSTOT00000001655
RefSeq Acc Id: ENSSTOP00000031658   ⟸   ENSSTOT00000039865
Protein Domains
AAA+ ATPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001655 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001655.3 UniProtKB/TrEMBL
  ENSSTOT00000039865.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Prot_ATP_ID_OB UniProtKB/TrEMBL
NCBI Gene Psmc1 ENTREZGENE
PANTHER 26S PROTEASOME REGULATORY SUBUNIT UniProtKB/TrEMBL
  26S PROTEASOME REGULATORY SUBUNIT 4 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  Prot_ATP_ID_OB UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287DDP1 ENTREZGENE, UniProtKB/TrEMBL
  I3LZ00 ENTREZGENE, UniProtKB/TrEMBL