Pqbp1 (polyglutamine binding protein 1)

Gene: Pqbp1 (polyglutamine binding protein 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Pqbp1

Name:

polyglutamine binding protein 1

RGD ID:

12484681

Description:

ENCODES a protein that exhibits GTPase binding (ortholog); INVOLVED IN positive regulation of non-motile cilium assembly (ortholog); regulation of dendrite morphogenesis (ortholog); regulation of RNA splicing (ortholog); ASSOCIATED WITH atrial heart septal defect (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN centrosome (ortholog); ciliary base (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

polyglutamine binding protein 1, transcript variant X1; polyglutamine binding protein 1, transcript variant X2; polyglutamine binding protein 1, transcript variant X3; polyglutamine binding protein 1, transcript variant X4; polyglutamine-binding protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,585,253 - 34,589,621 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	825,075 - 832,755 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	825,171 - 830,010 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial heart septal defect (ISO)

autism spectrum disorder (ISO)

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

genetic disease (ISO)

Growth Disorders (ISO)

hereditary spastic paraplegia (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

intellectual disability (ISO)

microcephaly (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

Renpenning syndrome (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-Linked Intellectual Developmental Disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (IEA)

alternative mRNA splicing, via spliceosome (IEA)

cellular response to exogenous dsRNA (IEA)

defense response to virus (IEA)

innate immune response (IEA)

neuron projection development (IEA)

positive regulation of defense response to virus by host (IEA)

positive regulation of non-motile cilium assembly (ISO)

positive regulation of type I interferon production (IEA)

regulation of dendrite morphogenesis (IEA,ISO)

regulation of RNA splicing (IEA,ISO)

RNA splicing (IEA)

Cellular Component

centrosome (ISO)

ciliary base (ISO)

cytoplasm (IEA)

cytoplasmic stress granule (IEA)

cytosol (IEA)

neuronal ribonucleoprotein granule (IEA)

nuclear speck (IEA)

nucleus (IEA)

plasma membrane (IEA)

Molecular Function

double-stranded DNA binding (IEA)

GTPase binding (ISO)

lipid binding (IEA)

protein binding (ISO)

ribonucleoprotein complex binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pqbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,585,253 - 34,589,621 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	825,075 - 832,755 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	825,171 - 830,010 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PQBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	48,897,930 - 48,903,143 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	48,890,197 - 48,903,402 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	48,755,213 - 48,760,420 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,640,139 - 48,645,364 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	52,903,108 - 52,908,335 (-)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,411,224 - 46,416,455 (+)	NCBI		HuRef
CHM1_1	X	48,786,337 - 48,791,564 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	48,308,411 - 48,313,619 (+)	NCBI		T2T-CHM13v2.0

Pqbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,760,759 - 7,765,469 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	7,760,758 - 7,765,508 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	7,894,519 - 7,899,269 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,894,519 - 7,899,269 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,471,649 - 7,476,354 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	4,142,378 - 4,147,084 (-)	NCBI		MGSCv36	mm8
MGSCv36	X	7,051,482 - 7,056,187 (-)	NCBI		MGSCv36	mm8
Celera	X	3,570,308 - 3,575,379 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.56	NCBI

Pqbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,275,445 - 17,280,018 (+)	NCBI		GRCr8
mRatBN7.2	X	14,603,516 - 14,608,091 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,603,539 - 14,608,087 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,417,449 - 19,421,632 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,661,479 - 20,665,662 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,926,649 - 16,930,832 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,448,570 - 15,453,130 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,348,138 - 15,453,130 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,229,838 - 16,234,365 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,638,460 - 26,642,640 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	14,688,668 - 14,692,848 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

Pqbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	430,853 - 434,205 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	430,324 - 434,205 (+)	NCBI	ChiLan1.0	ChiLan1.0

PQBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,379,690 - 50,392,268 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,383,075 - 50,395,640 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	41,188,244 - 41,200,312 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	49,046,351 - 49,058,587 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	49,053,030 - 49,058,585 (+)	Ensembl	panpan1.1		panPan2

PQBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	42,056,660 - 42,060,508 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	42,056,708 - 42,121,818 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,432,105 - 16,435,949 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,192,893 - 42,196,738 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,192,898 - 42,196,731 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	42,179,100 - 42,182,944 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	42,167,381 - 42,171,226 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	42,261,589 - 42,265,433 (+)	NCBI		UU_Cfam_GSD_1.0

PQBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	42,975,413 - 42,981,724 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	42,976,086 - 42,981,732 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,831,705 - 47,837,374 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PQBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,014,664 - 46,020,204 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	46,015,250 - 46,023,988 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,499,628 - 11,505,316 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pqbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	681,167 - 684,251 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624893	680,929 - 684,251 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000030266 ⟹ ENSSTOP00000028126

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936721	825,075 - 832,755 (+)	Ensembl

RefSeq Acc Id:

XM_005338659 ⟹ XP_005338716

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	34,585,581 - 34,589,621 (+)	NCBI
SpeTri2.0	NW_004936721	826,007 - 830,010 (+)	NCBI

Sequence:

show sequence

GAGAATTTTGGTGATACTGCCACCTATCTCTTCCATCTCTTAGCACGTAGATTGTTAGTCTAGC
TATTGGTGCAGTTAGGTCTGTCACCTACCGCTATGCCGCTGCCGGTTGCACTGCAGACCCGCTT
GGCCAAGAGAGGGATCCTGAAACATCTGGAGCCTGAACCGGAGGAAGAGATCATTGCTGAGGAC
TATGATGATGATCCTGTGGACTATGAGGCCACCCGGTTGGAGGGCCTGCCACCCAGCTGGTACA
AGGTGTTCGACCCTTCCTGCGGGCTCCCTTACTACTGGAATGTGGACACAGACCTCGTGTCCTG
GCTCTCCCCACATGACCCCAACTCCGTGGTTACCAAATCTGCCAAGAAGCTCAGGAGCAGTAAT
GCAGATGCTGAGGAGAAGTCAGATCGGAGCCATGAGAAGTCAGACAGGGGCCATGAGAAGTCGG
ACAGGGGCCATGAAAAGCTGGACCGGGGCCATGACAAGTCGGATCGGAACCATGACAAGTCTGA
CAGAGATCGAGAACGTAGCTATGACAAAGTAGACAGAGAGAGAGAACGGGACAGGGAACGGGAT
CGGGACCGTGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAGAACGGCGCCACCATCGCAGGG
AGGAACTGGCTCCCTACCCCAAGAGCAAGAAGGTGGCAAGCCGAAAGGATGACGAGTTAGACCC
CATGGACCCCAGCTCATACTCTGATGCACCCCGGGGCACATGGTCAACAGGACTCCCCAAGCGG
AATGAGGCTAAAACGGGTGCTGACACGACAGCAGCGGGGCCCCTCTTCCAGCAACGTCCATACC
CATCCCCAGGGGCTGTGCTCCGGGCCAATGCTGAGGCTTCCCGAACCAAGCAGCAGGACTGAAC
CTTTGTTCTCTGGAGCCCTGGCAATTTTCTTTTTTCTTTTCTTTTTGCGATACTGGATATCGAA
CCCAGGGCCTTGTACATGCTAGGCAAGCATTCTACCACTGAGCTATTCCCCCAGCCCCCCTGGT
GTTTTTAATAAAAGCTTTACTGTGGATCATGTT

hide sequence

RefSeq Acc Id:

XM_013364446 ⟹ XP_013219900

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	34,585,253 - 34,589,621 (+)	NCBI
SpeTri2.0	NW_004936721	825,172 - 830,010 (+)	NCBI

Sequence:

show sequence

AGGGATTATGAGATACGAAGTCAGGGGAAACGTCTGATAGTCCGTACTGCACCGCACCTACTCA
AGCACACAACTGTGGATTCTCTTAACAGAGCCTGAGTGGGAGGAGCCAGGTGAGGGGGCGGAAG
GAAGTTTCTGAGAGTCTCCCGAGTTCGGTACGTGACACTGTGTGGCCTGTGTGTCTCCCGTCCA
CCTCCCATGGCTGGCCTGGGCGCCGCAACCGCAGTCCCAGTGCCTGTGACTGTTGTCGTACCAA
GGCTCCTCCATGGCGCCCGCGTCTGGCGGCGCAGTTTGGCGGGACCCTAACCAGGCCACGCCCC
CAGTGTAACGCATATAGGCGCGCGAGCTTTTCACCTCGTCCAGGGAAACGATTGGGTCGCTTCG
CTACTCGTCAAGCCAAAGGAGCACTCTTATTGGTCAGCTATGTTTGCGTCATCAGCTCACTGCA
GCCCTTGCGTCGCCCAGTTACCTCAAGGCTTCGGGGAAGAGGACTTCATTTTGTGCTTCGAGGG
GGAAAAATATAGATTCGCGTGGTACTGGTGATAATAGTGGCGACGAGGGTGTGTCGGCCGGTCT
AACAGCTTTTCCACTACCCGCACGATTGTTTTGGTAATCCTGAGGTCTGTCACCTACCGCTATG
CCGCTGCCGGTTGCACTGCAGACCCGCTTGGCCAAGAGAGGGATCCTGAAACATCTGGAGCCTG
AACCGGAGGAAGAGATCATTGCTGAGGACTATGATGATGATCCTGTGGACTATGAGGCCACCCG
GTTGGAGGGCCTGCCACCCAGCTGGTACAAGGTGTTCGACCCTTCCTGCGGGCTCCCTTACTAC
TGGAATGTGGACACAGACCTCGTGTCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCA
AATCTGCCAAGAAGCTCAGGAGCAGTAATGCAGATGCTGAGGAGAAGTCAGATCGGAGCCATGA
GAAGTCAGACAGGGGCCATGAGAAGTCGGACAGGGGCCATGAAAAGCTGGACCGGGGCCATGAC
AAGTCGGATCGGAACCATGACAAGTCTGACAGAGATCGAGAACGTAGCTATGACAAAGTAGACA
GAGAGAGAGAACGGGACAGGGAACGGGATCGGGACCGTGGGTATGACAAGGCAGACCGGGAAGA
GGGCAAAGAACGGCGCCACCATCGCAGGGAGGAACTGGCTCCCTACCCCAAGAGCAAGAAGGTG
GCAAGCCGAAAGGATGACGAGTTAGACCCCATGGACCCCAGCTCATACTCTGATGCACCCCGGG
GCACATGGTCAACAGGACTCCCCAAGCGGAATGAGGCTAAAACGGGTGCTGACACGACAGCAGC
GGGGCCCCTCTTCCAGCAACGTCCATACCCATCCCCAGGGGCTGTGCTCCGGGCCAATGCTGAG
GCTTCCCGAACCAAGCAGCAGGACTGAACCTTTGTTCTCTGGAGCCCTGGCAATTTTCTTTTTT
CTTTTCTTTTTGCGATACTGGATATCGAACCCAGGGCCTTGTACATGCTAGGCAAGCATTCTAC
CACTGAGCTATTCCCCCAGCCCCCCTGGTGTTTTTAATAAAAGCTTTACTGTGGATCATGTT

hide sequence

RefSeq Acc Id:

XM_013364447 ⟹ XP_013219901

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	34,585,259 - 34,589,621 (+)	NCBI
SpeTri2.0	NW_004936721	825,171 - 830,010 (+)	NCBI

Sequence:

show sequence

GAGGGATTATGAGATACGAAGTCAGGGGAAACGTCTGATAGTCCGTACTGCACCGCACCTACTC
AAGCACACAACTGTGGATTCTCTTAACAGAGCCTGAGTGGGAGGAGCCAGGTGAGGGGGCGGAA
GGAAGTTTCTGAGAGTCTCCCGAGTTCGGTACGTGACACTGTGTGGCCTGTGTGTCTCCCGTCC
ACCTCCCATGGCTGGCCTGGGCGCCGCAACCGCAGTCCCAGTGCCTGTGACTGTTGTCGTACCA
AGGCTCCTCCATGGCGCCCGCGTCTGGCGGCGCAGTTTGGCGGGACCCTAACCAGGCCACGCCC
CCAGTGTAACGCATATAGGCGCGCGAGCTTTTCACCTCGTCCAGGGAAACGATTGGGTCGCTTC
GCTACTCGTCAAGCCAAAGGAGCACTCTTATTGGTCAGCTATGTTTGCGTCATCAGCTCACTGC
AGCCCTTGCGTCGCCCAGTTACCTCAAGGCTTCGGGGAAGAGGACTTCATTTTGTGCTTCGAGG
GGGAAAAATATAGATTCGCGTGGTACTGGTGATAATAGTGGCGACGAGGGTGTGTCGGCCGGTC
TAACAGCTTTTCCACTACCCGCACGATTGTTTTGGTCTGTCACCTACCGCTATGCCGCTGCCGG
TTGCACTGCAGACCCGCTTGGCCAAGAGAGGGATCCTGAAACATCTGGAGCCTGAACCGGAGGA
AGAGATCATTGCTGAGGACTATGATGATGATCCTGTGGACTATGAGGCCACCCGGTTGGAGGGC
CTGCCACCCAGCTGGTACAAGGTGTTCGACCCTTCCTGCGGGCTCCCTTACTACTGGAATGTGG
ACACAGACCTCGTGTCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAAATCTGCCAA
GAAGCTCAGGAGCAGTAATGCAGATGCTGAGGAGAAGTCAGATCGGAGCCATGAGAAGTCAGAC
AGGGGCCATGAGAAGTCGGACAGGGGCCATGAAAAGCTGGACCGGGGCCATGACAAGTCGGATC
GGAACCATGACAAGTCTGACAGAGATCGAGAACGTAGCTATGACAAAGTAGACAGAGAGAGAGA
ACGGGACAGGGAACGGGATCGGGACCGTGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAGAA
CGGCGCCACCATCGCAGGGAGGAACTGGCTCCCTACCCCAAGAGCAAGAAGGTGGCAAGCCGAA
AGGATGACGAGTTAGACCCCATGGACCCCAGCTCATACTCTGATGCACCCCGGGGCACATGGTC
AACAGGACTCCCCAAGCGGAATGAGGCTAAAACGGGTGCTGACACGACAGCAGCGGGGCCCCTC
TTCCAGCAACGTCCATACCCATCCCCAGGGGCTGTGCTCCGGGCCAATGCTGAGGCTTCCCGAA
CCAAGCAGCAGGACTGAACCTTTGTTCTCTGGAGCCCTGGCAATTTTCTTTTTTCTTTTCTTTT
TGCGATACTGGATATCGAACCCAGGGCCTTGTACATGCTAGGCAAGCATTCTACCACTGAGCTA
TTCCCCCAGCCCCCCTGGTGTTTTTAATAAAAGCTTTACTGTGGATCATGTT

hide sequence

RefSeq Acc Id:

XM_013364448 ⟹ XP_013219902

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	34,585,497 - 34,589,621 (+)	NCBI
SpeTri2.0	NW_004936721	825,946 - 830,010 (+)	NCBI

Sequence:

show sequence

GAGCCTGTGCCTGGAAGAGGAACTGGATGCTGCAGCATCCGGTCTCGAGAGCAGGGTCTGTCAC
CTACCGCTATGCCGCTGCCGGTTGCACTGCAGACCCGCTTGGCCAAGAGAGGGATCCTGAAACA
TCTGGAGCCTGAACCGGAGGAAGAGATCATTGCTGAGGACTATGATGATGATCCTGTGGACTAT
GAGGCCACCCGGTTGGAGGGCCTGCCACCCAGCTGGTACAAGGTGTTCGACCCTTCCTGCGGGC
TCCCTTACTACTGGAATGTGGACACAGACCTCGTGTCCTGGCTCTCCCCACATGACCCCAACTC
CGTGGTTACCAAATCTGCCAAGAAGCTCAGGAGCAGTAATGCAGATGCTGAGGAGAAGTCAGAT
CGGAGCCATGAGAAGTCAGACAGGGGCCATGAGAAGTCGGACAGGGGCCATGAAAAGCTGGACC
GGGGCCATGACAAGTCGGATCGGAACCATGACAAGTCTGACAGAGATCGAGAACGTAGCTATGA
CAAAGTAGACAGAGAGAGAGAACGGGACAGGGAACGGGATCGGGACCGTGGGTATGACAAGGCA
GACCGGGAAGAGGGCAAAGAACGGCGCCACCATCGCAGGGAGGAACTGGCTCCCTACCCCAAGA
GCAAGAAGGTGGCAAGCCGAAAGGATGACGAGTTAGACCCCATGGACCCCAGCTCATACTCTGA
TGCACCCCGGGGCACATGGTCAACAGGACTCCCCAAGCGGAATGAGGCTAAAACGGGTGCTGAC
ACGACAGCAGCGGGGCCCCTCTTCCAGCAACGTCCATACCCATCCCCAGGGGCTGTGCTCCGGG
CCAATGCTGAGGCTTCCCGAACCAAGCAGCAGGACTGAACCTTTGTTCTCTGGAGCCCTGGCAA
TTTTCTTTTTTCTTTTCTTTTTGCGATACTGGATATCGAACCCAGGGCCTTGTACATGCTAGGC
AAGCATTCTACCACTGAGCTATTCCCCCAGCCCCCCTGGTGTTTTTAATAAAAGCTTTACTGTG
GATCATGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005338716	(Get FASTA)	NCBI Sequence Viewer
	XP_013219900	(Get FASTA)	NCBI Sequence Viewer
	XP_013219901	(Get FASTA)	NCBI Sequence Viewer
	XP_013219902	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000028126.1
GenBank Protein	KAG3272075	(Get FASTA)	NCBI Sequence Viewer
	KAG3272076	(Get FASTA)	NCBI Sequence Viewer
	KAG3272077	(Get FASTA)	NCBI Sequence Viewer
	KAG3272078	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013219901 ⟸ XM_013364447

- UniProtKB:

A0A287D3G8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGLPY
YWNVDTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKSDRSHEKSDRGHEKSDRGHEKLDRGH
DKSDRNHDKSDRDRERSYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK
VASRKDDELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANA
EASRTKQQD

hide sequence

RefSeq Acc Id:

XP_013219900 ⟸ XM_013364446

- UniProtKB:

A0A287D3G8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGLPY
YWNVDTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKSDRSHEKSDRGHEKSDRGHEKLDRGH
DKSDRNHDKSDRDRERSYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK
VASRKDDELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANA
EASRTKQQD

hide sequence

RefSeq Acc Id:

XP_013219902 ⟸ XM_013364448

- UniProtKB:

A0A287D3G8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGLPY
YWNVDTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKSDRSHEKSDRGHEKSDRGHEKLDRGH
DKSDRNHDKSDRDRERSYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK
VASRKDDELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANA
EASRTKQQD

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RefSeq Acc Id:

XP_005338716 ⟸ XM_005338659

- UniProtKB:

A0A287D3G8 (UniProtKB/TrEMBL)

- Sequence:

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MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGLPY
YWNVDTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKSDRSHEKSDRGHEKSDRGHEKLDRGH
DKSDRNHDKSDRDRERSYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK
VASRKDDELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANA
EASRTKQQD

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RefSeq Acc Id:

ENSSTOP00000028126 ⟸ ENSSTOT00000030266

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000034920	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000030266.1	UniProtKB/TrEMBL
Gene3D-CATH	2.20.70.10	UniProtKB/TrEMBL
	Glutaredoxin	UniProtKB/TrEMBL
InterPro	WW_dom	UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Pqbp1	ENTREZGENE
PANTHER	12 KDA HEAT SHOCK PROTEIN	UniProtKB/TrEMBL
	12 KDA HEAT SHOCK PROTEIN	UniProtKB/TrEMBL
PROSITE	WW_DOMAIN_2	UniProtKB/TrEMBL
SMART	SM00456	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51045	UniProtKB/TrEMBL
UniProt	A0A287D3G8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM