Slc16a12 (solute carrier family 16 member 12) - Rat Genome Database

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Gene: Slc16a12 (solute carrier family 16 member 12) Ictidomys tridecemlineatus
Analyze
Symbol: Slc16a12
Name: solute carrier family 16 member 12
RGD ID: 12478706
Description: ENCODES a protein that exhibits creatine transmembrane transporter activity (inferred); monocarboxylic acid transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN creatinine metabolic process (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 47 (ortholog); coloboma (ortholog); FOUND IN basolateral plasma membrane (inferred); lateral plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 12; solute carrier family 16 member 12, transcript variant X1; solute carrier family 16 member 12, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,114,853 - 43,133,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366014,747,489 - 4,763,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366014,685,215 - 4,766,116 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc16a12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,114,853 - 43,133,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366014,747,489 - 4,763,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366014,685,215 - 4,766,116 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381089,430,299 - 89,556,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1089,430,299 - 89,556,641 (-)EnsemblGRCh38hg38GRCh38
GRCh371091,190,056 - 91,295,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361091,180,036 - 91,285,293 (-)NCBINCBI36Build 36hg18NCBI36
Celera1084,936,860 - 85,042,126 (-)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1084,824,228 - 84,929,593 (-)NCBIHuRef
CHM1_11091,472,067 - 91,577,412 (-)NCBICHM1_1
T2T-CHM13v2.01090,314,133 - 90,419,429 (-)NCBIT2T-CHM13v2.0
Slc16a12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,645,801 - 34,725,223 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1934,645,803 - 34,724,689 (-)EnsemblGRCm39 Ensembl
GRCm381934,668,401 - 34,747,493 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,668,403 - 34,747,289 (-)EnsemblGRCm38mm10GRCm38
MGSCv371934,742,896 - 34,821,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361934,734,403 - 34,813,108 (-)NCBIMGSCv36mm8
Celera1935,442,689 - 35,521,028 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.79NCBI
Slc16a12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,597,165 - 241,674,821 (-)NCBIGRCr8
mRatBN7.21232,184,004 - 232,262,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,185,907 - 232,262,141 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,579,603 - 240,608,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,498,691 - 247,521,337 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01240,336,893 - 240,359,535 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,976,071 - 253,054,500 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,976,644 - 253,000,760 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01260,197,556 - 260,275,962 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41238,643,040 - 238,665,699 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11238,807,343 - 238,830,600 (-)NCBI
Celera1229,298,962 - 229,321,612 (-)NCBICelera
Cytogenetic Map1q53NCBI
Slc16a12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554253,509,142 - 3,560,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554253,474,814 - 3,560,138 (+)NCBIChiLan1.0ChiLan1.0
SLC16A12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28101,446,803 - 101,481,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110101,452,146 - 101,486,786 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01086,155,527 - 86,187,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11089,696,148 - 89,727,585 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1089,696,148 - 89,727,585 (-)Ensemblpanpan1.1panPan2
SLC16A12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,343,773 - 4,430,653 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,345,546 - 4,421,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha284,579,217 - 4,664,998 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0284,565,289 - 4,652,174 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl284,567,687 - 4,651,465 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1284,323,134 - 4,402,863 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0284,365,926 - 4,445,342 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,501,245 - 4,580,912 (-)NCBIUU_Cfam_GSD_1.0
SLC16A12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14101,273,996 - 101,368,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114101,273,977 - 101,368,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214110,262,470 - 110,354,305 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1982,817,476 - 82,917,004 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl982,818,994 - 82,916,837 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604843,493,620 - 43,592,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624737312,039 - 365,915 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624737312,039 - 405,432 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000009605   ⟹   ENSSTOP00000008616
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366014,747,489 - 4,763,697 (+)Ensembl
RefSeq Acc Id: XM_005333745   ⟹   XP_005333802
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721343,114,853 - 43,133,513 (+)NCBI
SpeTri2.0NW_0049366014,747,448 - 4,766,116 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040272176   ⟹   XP_040128110
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721343,118,600 - 43,133,513 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005333802 (Get FASTA)   NCBI Sequence Viewer  
  XP_040128110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008616.3
GenBank Protein KAG3264513 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264514 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333802   ⟸   XM_005333745
- Peptide Label: isoform X2
- UniProtKB: I3MDV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040128110   ⟸   XM_040272176
- Peptide Label: isoform X1
- UniProtKB: I3MDV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000008616   ⟸   ENSSTOT00000009605

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009614 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009605.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Slc16a12 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  MONOCARBOXYLATE TRANSPORTER 12 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3MDV4 ENTREZGENE, UniProtKB/TrEMBL