Gria1 (glutamate ionotropic receptor AMPA type subunit 1) - Rat Genome Database

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Gene: Gria1 (glutamate ionotropic receptor AMPA type subunit 1) Ictidomys tridecemlineatus
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Symbol: Gria1
Name: glutamate ionotropic receptor AMPA type subunit 1
RGD ID: 12466002
Description: ENCODES a protein that exhibits adenylate cyclase binding (ortholog); amyloid-beta binding (ortholog); beta-2 adrenergic receptor binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); cellular response to amine stimulus (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; Reelin signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); allergic rhinitis (ortholog); FOUND IN asymmetric synapse (ortholog); cell surface (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate ionotropic receptor AMPA type subunit 1, transcript variant X1; glutamate ionotropic receptor AMPA type subunit 1, transcript variant X2; glutamate receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213110,488,036 - 110,787,054 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,940,009 - 9,083,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
behavioral response to pain  (ISO)
cell surface receptor signaling pathway  (IEA)
cellular response to amine stimulus  (ISO)
cellular response to amino acid stimulus  (ISO)
cellular response to ammonium ion  (IEA,ISO)
cellular response to brain-derived neurotrophic factor stimulus  (ISO)
cellular response to dsRNA  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to L-glutamate  (ISO)
cellular response to organic cyclic compound  (ISO)
cellular response to peptide hormone stimulus  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (IEA,ISO)
conditioned place preference  (ISO)
ionotropic glutamate receptor signaling pathway  (IEA)
long-term memory  (IEA,ISO)
long-term synaptic depression  (IEA,ISO)
long-term synaptic potentiation  (ISO)
modulation of chemical synaptic transmission  (IEA)
monoatomic ion transmembrane transport  (IEA)
monoatomic ion transport  (IEA)
neuronal action potential  (ISO)
positive regulation of excitatory postsynaptic potential  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of locomotion involved in locomotory behavior  (ISO)
positive regulation of membrane potential  (ISO)
positive regulation of synaptic transmission  (ISO)
receptor internalization  (IEA)
regulation of monoatomic ion transmembrane transport  (ISO)
regulation of postsynaptic cytosolic calcium ion concentration  (IEA)
regulation of postsynaptic membrane potential  (IEA)
regulation of presynaptic membrane potential  (IEA)
regulation of receptor recycling  (ISO)
regulation of synaptic plasticity  (ISO)
response to arsenic-containing substance  (ISO)
response to cocaine  (ISO)
response to electrical stimulus  (ISO)
response to estradiol  (ISO)
response to ethanol  (ISO)
response to fungicide  (ISO)
response to lithium ion  (ISO)
response to morphine  (ISO)
response to nutrient levels  (ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (ISO)
response to psychosocial stress  (ISO)
response to sucrose  (ISO)
response to toxic substance  (ISO)
response to xenobiotic stimulus  (ISO)
spinal cord development  (ISO)
synapse assembly  (IEA)
synaptic transmission, glutamatergic  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gria1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213110,488,036 - 110,787,054 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,940,009 - 9,083,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385153,489,615 - 153,813,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5153,489,615 - 153,813,869 (+)EnsemblGRCh38hg38GRCh38
GRCh375152,870,230 - 153,193,429 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365152,850,499 - 153,171,354 (+)NCBINCBI36Build 36hg18NCBI36
Build 345152,850,498 - 153,171,354NCBI
Celera5148,945,616 - 149,268,929 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,010,721 - 148,334,111 (+)NCBIHuRef
CHM1_15152,302,506 - 152,626,274 (+)NCBICHM1_1
T2T-CHM13v2.05154,022,776 - 154,347,051 (+)NCBIT2T-CHM13v2.0
Gria1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,902,342 - 57,221,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1156,902,213 - 57,221,070 (+)EnsemblGRCm39 Ensembl
GRCm381157,011,571 - 57,330,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,011,387 - 57,330,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371156,825,193 - 57,143,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361156,855,379 - 57,146,439 (+)NCBIMGSCv36mm8
Celera1161,935,002 - 62,079,468 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1134.51NCBI
Gria1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81041,710,540 - 42,030,105 (+)NCBIGRCr8
mRatBN7.21041,210,713 - 41,527,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,210,713 - 41,527,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1045,861,160 - 46,177,214 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01045,351,373 - 45,667,433 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01040,855,030 - 41,171,065 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01042,441,723 - 42,760,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1042,614,713 - 42,760,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01042,257,736 - 42,571,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41042,613,359 - 42,616,610 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1040,506,762 - 40,822,664 (+)NCBICelera
Cytogenetic Map10q22NCBI
Gria1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554087,912,592 - 8,223,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554087,912,223 - 8,226,241 (+)NCBIChiLan1.0ChiLan1.0
GRIA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24148,684,899 - 149,011,988 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15146,824,470 - 147,151,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05148,879,996 - 149,206,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15154,877,807 - 155,204,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5154,879,080 - 155,204,660 (+)Ensemblpanpan1.1panPan2
GRIA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,801,269 - 56,103,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,803,296 - 56,103,669 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,639,927 - 55,995,772 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0456,183,572 - 56,538,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl456,237,177 - 56,538,754 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1456,012,350 - 56,367,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0456,111,546 - 56,466,793 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,613,928 - 56,969,631 (-)NCBIUU_Cfam_GSD_1.0
GRIA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1669,332,587 - 69,655,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11669,332,786 - 69,654,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21675,191,970 - 75,275,696 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12355,944,128 - 56,265,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,101,294 - 56,265,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603421,402,866 - 21,730,046 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gria1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473335,339,683 - 35,647,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473335,337,039 - 35,648,184 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008755   ⟹   ENSSTOP00000007848
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365158,940,009 - 9,083,151 (-)Ensembl
RefSeq Acc Id: XM_021726493   ⟹   XP_021582168
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213110,488,036 - 110,787,052 (-)NCBI
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726494   ⟹   XP_021582169
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213110,488,036 - 110,787,054 (-)NCBI
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021582168 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582169 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007848.3
GenBank Protein KAG3265429 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265430 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021582169   ⟸   XM_021726494
- Peptide Label: isoform X2
- UniProtKB: I3MC85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582168   ⟸   XM_021726493
- Peptide Label: isoform X1
- UniProtKB: I3MC85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000007848   ⟸   ENSSTOT00000008755

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008747 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008755.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
  Solute-binding_3/MltF_N UniProtKB/TrEMBL
NCBI Gene Gria1 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR 1 UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/TrEMBL
  Lig_chan UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/TrEMBL
  SBP_bac_3 UniProtKB/TrEMBL
PRINTS NMDARECEPTOR UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/TrEMBL
  PBPe UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/TrEMBL
  SSF53822 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt I3MC85 ENTREZGENE, UniProtKB/TrEMBL