Ubqln4 (ubiquilin 4) - Rat Genome Database

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Gene: Ubqln4 (ubiquilin 4) Ictidomys tridecemlineatus
Analyze
Symbol: Ubqln4
Name: ubiquilin 4
RGD ID: 12461928
Description: ENCODES a protein that exhibits identical protein binding (inferred); K48-linked polyubiquitin modification-dependent protein binding (inferred); polyubiquitin modification-dependent protein binding (inferred); INVOLVED IN DNA damage response (inferred); negative regulation of autophagosome maturation (inferred); negative regulation of double-strand break repair via homologous recombination (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytosolic proteasome complex (ortholog); nuclear proteasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquilin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,269,482 - 26,285,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,301,389 - 5,315,756 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,299,864 - 5,316,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ubqln4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,269,482 - 26,285,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,301,389 - 5,315,756 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,299,864 - 5,316,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,031,247 - 156,053,798 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,035,299 - 156,053,798 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,005,090 - 156,023,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,271,716 - 154,290,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 341152,818,165 - 152,836,589NCBI
Celera1129,078,055 - 129,096,477 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,367,831 - 127,386,064 (-)NCBIHuRef
CHM1_11157,401,172 - 157,419,603 (-)NCBICHM1_1
T2T-CHM13v2.01155,169,709 - 155,192,264 (-)NCBIT2T-CHM13v2.0
Ubqln4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,460,984 - 88,477,032 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,461,065 - 88,477,032 (+)EnsemblGRCm39 Ensembl
GRCm38388,553,677 - 88,569,725 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,553,758 - 88,569,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,357,638 - 88,373,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,639,643 - 88,655,652 (+)NCBIMGSCv36mm8
Celera388,593,533 - 88,609,536 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.87NCBI
Ubqln4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,310,524 - 176,325,724 (+)NCBIGRCr8
mRatBN7.22174,012,726 - 174,028,062 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,012,777 - 174,028,059 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,156,886 - 181,172,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,179,251 - 179,194,425 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,779,342 - 173,794,732 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,915,701 - 187,931,035 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,915,751 - 187,931,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,318,101 - 207,333,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,669,525 - 180,684,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,619,753 - 180,633,903 (+)NCBI
Celera2167,957,113 - 167,972,312 (+)NCBICelera
Cytogenetic Map2q34NCBI
Ubqln4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,220,548 - 2,236,646 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,218,794 - 2,236,665 (-)NCBIChiLan1.0ChiLan1.0
UBQLN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,792,457 - 93,814,703 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,524,402 - 93,545,849 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,374,635 - 131,395,986 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,209,490 - 135,225,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,209,490 - 135,225,666 (-)Ensemblpanpan1.1panPan2
UBQLN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,764,209 - 41,778,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,764,253 - 41,777,002 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,253,685 - 41,267,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,630,903 - 41,645,198 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,630,863 - 41,645,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,411,750 - 41,426,044 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,465,103 - 41,479,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,749,531 - 41,763,822 (+)NCBIUU_Cfam_GSD_1.0
UBQLN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,976,451 - 93,994,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,976,386 - 93,994,830 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,719,204 - 102,737,608 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBQLN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,811,275 - 7,829,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660387,107,553 - 7,127,896 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubqln4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,383,897 - 1,398,484 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,382,302 - 1,398,474 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005331454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000020254   ⟹   ENSSTOP00000015557
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365805,301,389 - 5,315,756 (-)Ensembl
RefSeq Acc Id: XM_005331454   ⟹   XP_005331511
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,269,482 - 26,285,374 (-)NCBI
SpeTri2.0NW_0049365805,299,864 - 5,316,583 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331511 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015557.2
GenBank Protein KAG3281772 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005331511   ⟸   XM_005331454
- Sequence:
RefSeq Acc Id: ENSSTOP00000015557   ⟸   ENSSTOT00000020254
Protein Domains
UBA   Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020043 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020254.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.100 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro STI1_HS-bd UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquilin UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Ubqln4 ENTREZGENE
PANTHER UBIQUILIN UniProtKB/TrEMBL
  UBIQUILIN-4 UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt I3MTW2_ICTTR UniProtKB/TrEMBL