Trpc3 (transient receptor potential cation channel subfamily C member 3) - Rat Genome Database

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Gene: Trpc3 (transient receptor potential cation channel subfamily C member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Trpc3
Name: transient receptor potential cation channel subfamily C member 3
RGD ID: 12460360
Description: ENCODES a protein that exhibits calcium-activated cation channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (inferred); monoatomic ion transport (inferred); positive regulation of calcium ion transport into cytosol (inferred); ASSOCIATED WITH Albuminuria (ortholog); bipolar disorder (ortholog); cerebellar ataxia type 41 (ortholog); FOUND IN cation channel complex (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: short transient receptor potential channel 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366621,129,278 - 1,171,378 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trpc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366621,129,278 - 1,171,378 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,874,481 - 121,952,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4121,874,481 - 121,952,060 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,795,636 - 122,873,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,019,882 - 123,074,061 (-)NCBINCBI36Build 36hg18NCBI36
Build 344123,158,037 - 123,212,216NCBI
Celera4120,186,020 - 120,258,701 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4118,526,892 - 118,599,598 (-)NCBIHuRef
CHM1_14122,776,636 - 122,849,349 (-)NCBICHM1_1
T2T-CHM13v2.04125,178,529 - 125,256,098 (-)NCBIT2T-CHM13v2.0
Trpc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,674,626 - 36,744,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,674,631 - 36,744,316 (-)EnsemblGRCm39 Ensembl
GRCm38336,620,482 - 36,690,429 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,620,482 - 36,690,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,519,404 - 36,589,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36336,812,122 - 36,863,152 (-)NCBIMGSCv36mm8
Celera336,505,427 - 36,575,273 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.93NCBI
Trpc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82121,409,436 - 121,487,095 (-)NCBIGRCr8
mRatBN7.22119,481,313 - 119,619,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2119,481,400 - 119,558,855 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2126,036,120 - 126,102,387 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,148,616 - 124,214,886 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,777,565 - 118,843,835 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02123,329,954 - 123,467,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,329,875 - 123,407,496 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,945,309 - 143,022,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,117,180 - 123,184,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12123,062,239 - 123,110,364 (-)NCBI
Celera2114,439,430 - 114,505,661 (-)NCBICelera
Cytogenetic Map2q25NCBI
Trpc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,628,890 - 18,678,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,628,951 - 18,678,525 (+)NCBIChiLan1.0ChiLan1.0
TRPC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23119,675,137 - 119,748,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14119,944,205 - 120,017,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04114,079,395 - 114,153,014 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14125,217,086 - 125,288,918 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,217,086 - 125,289,014 (-)Ensemblpanpan1.1panPan2
TRPC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,207,565 - 18,272,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,207,417 - 18,271,828 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,424,474 - 18,489,427 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01918,325,131 - 18,390,132 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1918,257,209 - 18,389,851 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11918,276,335 - 18,341,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01918,557,985 - 18,622,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01919,033,797 - 19,098,726 (+)NCBIUU_Cfam_GSD_1.0
TRPC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,129,611 - 102,206,946 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,129,539 - 102,206,512 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,324,967 - 109,402,046 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,160,569 - 69,233,322 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl769,158,867 - 69,231,858 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603748,122,249 - 48,196,700 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247772,153,265 - 2,232,449 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247772,154,887 - 2,232,476 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014734   ⟹   ENSSTOP00000013198
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366621,129,278 - 1,171,378 (-)Ensembl
RefSeq Acc Id: XM_005336510   ⟹   XP_005336567
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,875,572 - 65,989,487 (+)NCBI
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293348   ⟹   XP_040149282
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,941,626 - 65,989,487 (+)NCBI
RefSeq Acc Id: XM_040293349   ⟹   XP_040149283
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBI
RefSeq Acc Id: XR_005737399
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,875,570 - 65,988,641 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005336567 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149282 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149283 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013198.2
GenBank Protein KAG3276244 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005336567   ⟸   XM_005336510
- Peptide Label: isoform X1
- UniProtKB: I3MNG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149283   ⟸   XM_040293349
- Peptide Label: isoform X2
- UniProtKB: I3MNG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149282   ⟸   XM_040293348
- Peptide Label: isoform X1
- UniProtKB: I3MNG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000013198   ⟸   ENSSTOT00000014734
Protein Domains
Transient receptor ion channel


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014731 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014734.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRP_dom UniProtKB/TrEMBL
  TRPC3_channel UniProtKB/TrEMBL
  TRPC_channel UniProtKB/TrEMBL
NCBI Gene Trpc3 ENTREZGENE
PANTHER PTHR10117 UniProtKB/TrEMBL
  PTHR10117:SF8 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  TRP_2 UniProtKB/TrEMBL
PRINTS TRNSRECEPTRP UniProtKB/TrEMBL
  TRPCHANNEL3 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  TRP_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt I3MNG5 ENTREZGENE, UniProtKB/TrEMBL