Ccnd3 (cyclin D3) - Rat Genome Database

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Gene: Ccnd3 (cyclin D3) Ictidomys tridecemlineatus
Analyze
Symbol: Ccnd3
Name: cyclin D3
RGD ID: 12455675
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); hyaluronan biosynthetic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); cervix carcinoma (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN cyclin D3-CDK4 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin D3, transcript variant X1; cyclin D3, transcript variant X2; G1/S-specific cyclin-D3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,073,366 - 46,160,552 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,879,869 - 17,886,827 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,799,754 - 17,886,835 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccnd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,073,366 - 46,160,552 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,879,869 - 17,886,827 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,799,754 - 17,886,835 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCND3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,934,933 - 42,050,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,934,934 - 42,050,357 (-)EnsemblGRCh38hg38GRCh38
GRCh37641,902,671 - 42,016,632 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36642,010,649 - 42,017,530 (-)NCBINCBI36Build 36hg18NCBI36
Build 34642,010,649 - 42,017,530NCBI
Celera643,455,463 - 43,569,077 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,621,515 - 41,734,566 (-)NCBIHuRef
CHM1_1641,905,431 - 42,019,143 (-)NCBICHM1_1
T2T-CHM13v2.0641,763,493 - 41,878,294 (-)NCBIT2T-CHM13v2.0
Ccnd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,815,976 - 47,910,614 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,815,976 - 47,910,616 (+)EnsemblGRCm39 Ensembl
GRCm381747,505,051 - 47,599,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,505,051 - 47,599,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv371747,642,000 - 47,736,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,056,739 - 47,062,880 (+)NCBIMGSCv36mm8
Celera1750,938,969 - 51,036,715 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.37NCBI
Ccnd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,891,696 - 20,987,199 (-)NCBIGRCr8
mRatBN7.2913,394,161 - 13,400,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,394,169 - 13,489,371 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,973,914 - 21,980,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,038,080 - 27,044,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,337,315 - 25,343,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,404,816 - 15,410,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,404,822 - 15,410,943 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,326,227 - 14,332,267 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera911,145,441 - 11,151,481 (-)NCBICelera
Cytogenetic Map9q12NCBI
Ccnd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,268,118 - 8,273,855 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,266,523 - 8,273,855 (-)NCBIChiLan1.0ChiLan1.0
CCND3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,426,311 - 56,537,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1652,296,193 - 52,407,867 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,518,421 - 41,630,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,820,569 - 42,932,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,820,569 - 42,827,498 (-)Ensemblpanpan1.1panPan2
CCND3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,593,786 - 10,688,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,594,712 - 10,600,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,623,109 - 10,717,215 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,074,540 - 11,169,519 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,074,547 - 11,169,151 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,604,536 - 10,698,641 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,688,499 - 10,783,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,782,466 - 10,877,073 (-)NCBIUU_Cfam_GSD_1.0
CCND3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,082,097 - 37,181,366 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,087,336 - 37,182,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,489,107 - 42,493,235 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCND3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,107,236 - 30,228,449 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,221,598 - 30,227,452 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,934,657 - 42,061,231 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,148,076 - 17,194,000 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,148,108 - 17,194,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000021995   ⟹   ENSSTOP00000023402
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647617,879,869 - 17,886,827 (+)Ensembl
RefSeq Acc Id: XM_005318696   ⟹   XP_005318753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494646,073,366 - 46,080,222 (-)NCBI
SpeTri2.0NW_00493647617,879,928 - 17,886,835 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021721917   ⟹   XP_021577592
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494646,074,347 - 46,160,552 (-)NCBI
SpeTri2.0NW_00493647617,799,754 - 17,886,835 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318753 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577592 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023402.1
GenBank Protein KAG3289451 (Get FASTA)   NCBI Sequence Viewer  
  KAG3289452 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005318753   ⟸   XM_005318696
- Peptide Label: isoform X1
- UniProtKB: I3NGA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577592   ⟸   XM_021721917
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000023402   ⟸   ENSSTOT00000021995
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021553 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021995.2 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclins_cyclin-box UniProtKB/TrEMBL
NCBI Gene Ccnd3 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
  PTHR10177:SF65 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt I3NGA5 ENTREZGENE, UniProtKB/TrEMBL