Nlgn3 (neuroligin 3) - Rat Genome Database

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Gene: Nlgn3 (neuroligin 3) Ictidomys tridecemlineatus
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Symbol: Nlgn3
Name: neuroligin 3
RGD ID: 12454090
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); INVOLVED IN axon extension (ortholog); circadian sleep/wake cycle (ortholog); excitatory postsynaptic potential (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Episodic Ataxia Type 9 (ortholog); FOUND IN dendrite (ortholog); endocytic vesicle (ortholog); GABA-ergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuroligin 3, transcript variant X1; neuroligin 3, transcript variant X2; neuroligin 3, transcript variant X3; neuroligin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,672,077 - 46,696,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936762435,729 - 458,423 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936762435,729 - 458,261 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult behavior  (IEA)
axon extension  (ISO)
cell adhesion  (IEA)
chemical synaptic transmission  (IEA)
circadian sleep/wake cycle  (ISO)
excitatory postsynaptic potential  (ISO)
inhibitory postsynaptic potential  (ISO)
learning  (IEA)
long-term synaptic potentiation  (ISO)
membrane assembly  (IEA)
modulation of chemical synaptic transmission  (IEA,ISO)
negative regulation of dendritic spine morphogenesis  (ISO)
negative regulation of excitatory postsynaptic potential  (ISO)
neuron cell-cell adhesion  (IEA)
oligodendrocyte differentiation  (ISO)
positive regulation of dendritic spine development  (ISO)
positive regulation of excitatory postsynaptic potential  (ISO)
positive regulation of inhibitory postsynaptic potential  (ISO)
positive regulation of protein localization to synapse  (ISO)
positive regulation of synapse assembly  (ISO)
positive regulation of synaptic transmission, glutamatergic  (ISO)
positive regulation of synaptic vesicle clustering  (ISO)
postsynaptic membrane assembly  (IEA)
postsynaptic specialization assembly  (ISO)
prepulse inhibition  (ISO)
presynaptic membrane assembly  (IEA)
receptor-mediated endocytosis  (ISO)
regulation of dendritic spine morphogenesis  (ISO)
regulation of long-term synaptic potentiation  (ISO)
regulation of membrane potential  (IEA)
regulation of nervous system process  (IEA)
regulation of respiratory gaseous exchange by nervous system process  (ISO)
regulation of synaptic transmission, glutamatergic  (ISO)
regulation of terminal button organization  (ISO)
rhythmic synaptic transmission  (ISO)
social behavior  (IEA,ISO)
synapse assembly  (IEA)
synapse organization  (IEA,ISO)
synaptic vesicle endocytosis  (IEA)
visual learning  (ISO)
vocalization behavior  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nlgn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,672,077 - 46,696,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936762435,729 - 458,423 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936762435,729 - 458,261 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLGN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,144,841 - 71,175,307 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,144,821 - 71,175,255 (+)EnsemblGRCh38hg38GRCh38
GRCh37X70,364,691 - 70,391,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X70,281,436 - 70,307,776 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X70,147,731 - 70,174,070NCBI
CeleraX70,718,556 - 70,744,930 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX64,183,444 - 64,209,758 (+)NCBIHuRef
CHM1_1X70,257,401 - 70,284,066 (+)NCBICHM1_1
T2T-CHM13v2.0X69,578,926 - 69,609,395 (+)NCBIT2T-CHM13v2.0
Nlgn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,342,785 - 100,364,956 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,342,774 - 100,369,569 (+)EnsemblGRCm39 Ensembl
GRCm38X101,299,179 - 101,321,350 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,299,168 - 101,325,963 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X98,494,520 - 98,516,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X97,501,929 - 97,524,067 (+)NCBIMGSCv36mm8
CeleraX88,215,228 - 88,237,795 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX43.95NCBI
Nlgn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,469,251 - 70,497,380 (+)NCBIGRCr8
mRatBN7.2X66,427,926 - 66,457,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX66,429,458 - 66,451,876 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX67,912,829 - 67,935,228 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X71,413,217 - 71,435,616 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,974,124 - 68,996,518 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X71,199,390 - 71,227,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX71,199,491 - 71,222,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X72,051,846 - 72,075,119 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X89,376,193 - 89,398,665 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X89,449,625 - 89,471,949 (+)NCBI
CeleraX66,785,377 - 66,807,774 (+)NCBICelera
Cytogenetic MapXq22NCBI
Nlgn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547510,712,170 - 10,735,857 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547510,712,170 - 10,735,857 (+)NCBIChiLan1.0ChiLan1.0
NLGN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X70,822,214 - 70,848,479 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X70,825,828 - 70,852,082 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X60,413,098 - 60,439,359 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X70,469,764 - 70,496,526 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX70,469,764 - 70,496,526 (+)Ensemblpanpan1.1panPan2
NLGN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X55,510,729 - 55,532,396 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX55,513,626 - 55,531,371 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX46,337,800 - 46,359,510 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X56,479,897 - 56,501,589 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX56,479,918 - 56,501,589 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X54,447,828 - 54,469,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,779,249 - 55,800,946 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X55,706,411 - 55,728,100 (+)NCBIUU_Cfam_GSD_1.0
NLGN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX57,176,103 - 57,201,461 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X57,174,506 - 57,204,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X64,705,492 - 64,727,915 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NLGN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,941,371 - 60,967,942 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,941,654 - 60,967,936 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660652,802,397 - 2,828,656 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nlgn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249031,438,428 - 1,463,172 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249031,437,663 - 1,465,955 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000015853   ⟹   ENSSTOP00000014191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936762435,729 - 458,423 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037744   ⟹   ENSSTOP00000028344
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936762435,729 - 458,423 (-)Ensembl
RefSeq Acc Id: XM_005339961   ⟹   XP_005340018
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,672,077 - 46,696,110 (-)NCBI
SpeTri2.0NW_004936762435,729 - 458,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005339962   ⟹   XP_005340019
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,672,077 - 46,696,110 (-)NCBI
SpeTri2.0NW_004936762435,729 - 458,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005339964   ⟹   XP_005340021
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,672,077 - 46,696,110 (-)NCBI
SpeTri2.0NW_004936762435,729 - 458,261 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005340021   ⟸   XM_005339964
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005340019   ⟸   XM_005339962
- Peptide Label: isoform X2
- UniProtKB: A0A287D494 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005340018   ⟸   XM_005339961
- Peptide Label: isoform X1
- UniProtKB: I3MQG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000028344   ⟸   ENSSTOT00000037744
RefSeq Acc Id: ENSSTOP00000014191   ⟸   ENSSTOT00000015853
Protein Domains
Carboxylesterase type B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015853 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015853.3 UniProtKB/TrEMBL
  ENSSTOT00000037744.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  CarbesteraseB UniProtKB/TrEMBL
  Carboxylesterase_B_CS UniProtKB/TrEMBL
  Nlgn UniProtKB/TrEMBL
NCBI Gene Nlgn3 ENTREZGENE
PANTHER NEUROLIGIN UniProtKB/TrEMBL
  PTHR43903:SF4 UniProtKB/TrEMBL
Pfam COesterase UniProtKB/TrEMBL
PRINTS NEUROLIGIN UniProtKB/TrEMBL
PROSITE CARBOXYLESTERASE_B_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A287D494 ENTREZGENE, UniProtKB/TrEMBL
  I3MQG8 ENTREZGENE, UniProtKB/TrEMBL