Acsbg1 (acyl-CoA synthetase bubblegum family member 1) - Rat Genome Database

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Gene: Acsbg1 (acyl-CoA synthetase bubblegum family member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Acsbg1
Name: acyl-CoA synthetase bubblegum family member 1
RGD ID: 12452867
Description: ENCODES a protein that exhibits ATP binding (inferred); ligase activity (inferred); long-chain fatty acid-CoA ligase activity (inferred); INVOLVED IN long-chain fatty acid biosynthetic process (ortholog); ovarian follicle atresia (ortholog); response to glucocorticoid (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: long-chain-fatty-acid--CoA ligase ACSBG1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,919,410 - 118,974,658 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,767,652 - 36,822,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,767,656 - 36,822,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Acsbg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,919,410 - 118,974,658 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,767,652 - 36,822,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,767,656 - 36,822,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSBG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,167,468 - 78,234,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,167,468 - 78,245,688 (-)EnsemblGRCh38hg38GRCh38
GRCh371578,459,810 - 78,526,907 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,250,242 - 76,313,954 (-)NCBINCBI36Build 36hg18NCBI36
Build 341576,250,243 - 76,313,954NCBI
Celera1555,399,717 - 55,463,412 (-)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,220,752 - 55,284,725 (-)NCBIHuRef
CHM1_11578,581,093 - 78,645,049 (-)NCBICHM1_1
T2T-CHM13v2.01576,030,054 - 76,108,241 (-)NCBIT2T-CHM13v2.0
Acsbg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,512,163 - 54,569,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,512,161 - 54,569,154 (-)EnsemblGRCm39 Ensembl
GRCm38954,604,886 - 54,661,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,604,877 - 54,661,870 (-)EnsemblGRCm38mm10GRCm38
MGSCv37954,452,804 - 54,509,692 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36954,403,134 - 54,460,022 (-)NCBIMGSCv36mm8
Celera951,848,294 - 51,906,177 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.7NCBI
Acsbg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8863,887,433 - 63,943,486 (-)NCBIGRCr8
mRatBN7.2854,991,294 - 55,047,276 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,991,296 - 55,047,391 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx860,524,901 - 60,580,652 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,803,885 - 58,859,634 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,668,123 - 56,723,882 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0859,184,111 - 59,240,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,184,113 - 59,239,954 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0857,764,973 - 57,820,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4858,156,231 - 58,212,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1858,175,286 - 58,231,539 (-)NCBI
Celera854,479,867 - 54,535,554 (-)NCBICelera
Cytogenetic Map8q24NCBI
Acsbg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450701,517 - 745,126 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955450703,874 - 744,782 (-)NCBIChiLan1.0ChiLan1.0
ACSBG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,383,181 - 67,450,157 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,550,363 - 71,615,512 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,098,752 - 57,164,119 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11576,064,937 - 76,128,835 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,064,937 - 76,128,835 (-)Ensemblpanpan1.1panPan2
ACSBG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,319,222 - 58,367,087 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl358,319,376 - 58,366,854 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,010,594 - 61,058,477 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,787,092 - 58,834,985 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,787,098 - 58,835,240 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,283,566 - 58,331,437 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,491,354 - 58,539,229 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,840,625 - 58,888,510 (-)NCBIUU_Cfam_GSD_1.0
ACSBG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,705,121 - 47,762,538 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1747,705,091 - 47,760,797 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,259,397 - 53,311,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACSBG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1265,117,740 - 5,183,164 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl265,117,818 - 5,185,418 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048136,620,613 - 136,686,848 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acsbg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,617,711 - 2,661,174 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,618,000 - 2,661,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000007507   ⟹   ENSSTOP00000006707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647136,767,652 - 36,822,661 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034320   ⟹   ENSSTOP00000029113
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647136,785,334 - 36,822,722 (+)Ensembl
RefSeq Acc Id: XM_005316857   ⟹   XP_005316914
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640118,919,412 - 118,974,658 (+)NCBI
SpeTri2.0NW_00493647136,767,656 - 36,822,677 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274675   ⟹   XP_040130609
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640118,919,410 - 118,974,658 (+)NCBI
RefSeq Acc Id: XM_040274676   ⟹   XP_040130610
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640118,937,393 - 118,974,658 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005316914 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130609 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130610 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006707.3
  ENSSTOP00000029113.1
GenBank Protein KAG3262386 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316914   ⟸   XM_005316857
- Peptide Label: isoform X3
- UniProtKB: I3M9V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130609   ⟸   XM_040274675
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040130610   ⟸   XM_040274676
- Peptide Label: isoform X2
- UniProtKB: A0A287D6F0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000006707   ⟸   ENSSTOT00000007507
RefSeq Acc Id: ENSSTOP00000029113   ⟸   ENSSTOT00000034320
Protein Domains
AMP-dependent synthetase/ligase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007506 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007507.3 UniProtKB/TrEMBL
  ENSSTOT00000034320.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
NCBI Gene Acsbg1 ENTREZGENE
PANTHER ACYL-COA SYNTHETASE BUBBLEGUM FAMILY MEMBER 1 UniProtKB/TrEMBL
  LONG-CHAIN-FATTY-ACID--COA LIGASE UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0A287D6F0 ENTREZGENE, UniProtKB/TrEMBL
  I3M9V7 ENTREZGENE, UniProtKB/TrEMBL