Cit (citron rho-interacting serine/threonine kinase) - Rat Genome Database

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Gene: Cit (citron rho-interacting serine/threonine kinase) Ictidomys tridecemlineatus
Analyze
Symbol: Cit
Name: citron rho-interacting serine/threonine kinase
RGD ID: 12452150
Description: ENCODES a protein that exhibits scaffold protein binding (ortholog); INVOLVED IN dendrite development (ortholog); G2/M transition of mitotic cell cycle (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); ASSOCIATED WITH Ataxia (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN cleavage furrow (ortholog); GABA-ergic synapse (ortholog); glutamatergic postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: citron (rho-interacting, serine/threonine kinase 21); citron Rho-interacting kinase; citron rho-interacting serine/threonine kinase, transcript variant X1; citron rho-interacting serine/threonine kinase, transcript variant X2; citron rho-interacting serine/threonine kinase, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668991,036 - 1,146,294 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668991,043 - 1,146,578 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cit
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668991,036 - 1,146,294 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668991,043 - 1,146,578 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812119,685,791 - 119,877,320 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12119,685,791 - 119,877,320 (-)EnsemblGRCh38hg38GRCh38
GRCh3712120,123,596 - 120,315,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612118,607,981 - 118,799,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412118,586,317 - 118,777,812NCBI
Celera12119,756,651 - 119,948,207 (-)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12117,131,727 - 117,325,161 (-)NCBIHuRef
CHM1_112120,091,103 - 120,282,752 (-)NCBICHM1_1
T2T-CHM13v2.012119,673,075 - 119,864,647 (-)NCBIT2T-CHM13v2.0
Cit
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,983,284 - 116,147,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,983,337 - 116,147,006 (+)EnsemblGRCm39 Ensembl
GRCm385115,845,224 - 116,008,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,845,278 - 116,008,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv375116,295,665 - 116,456,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365116,106,655 - 116,267,342 (+)NCBIMGSCv36mm8
Celera5112,946,512 - 113,107,010 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.1NCBI
Cit
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,263,881 - 46,425,642 (-)NCBIGRCr8
mRatBN7.21240,603,073 - 40,764,846 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,605,563 - 40,763,860 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1241,778,820 - 41,938,342 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,392,543 - 42,552,063 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01241,453,005 - 41,612,527 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01246,334,669 - 46,494,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,334,665 - 46,494,174 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,136,329 - 48,295,119 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41241,858,134 - 42,019,601 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11241,721,050 - 41,801,648 (-)NCBI
Celera1242,234,665 - 42,392,523 (-)NCBICelera
Cytogenetic Map12q16NCBI
Cit
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,704,964 - 11,872,419 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,705,015 - 11,871,762 (+)NCBIChiLan1.0ChiLan1.0
CIT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210127,751,423 - 127,942,873 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112127,747,802 - 127,939,251 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012117,264,627 - 117,456,069 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112120,641,747 - 120,832,511 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12120,641,747 - 120,832,511 (-)Ensemblpanpan1.1panPan2
CIT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12615,721,500 - 15,885,133 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2615,723,690 - 15,884,343 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2615,726,097 - 15,891,228 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02615,988,829 - 16,154,093 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2615,989,170 - 16,153,050 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12615,958,883 - 16,123,644 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,027,058 - 16,192,182 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,068,008 - 16,233,213 (-)NCBIUU_Cfam_GSD_1.0
CIT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1433,009,877 - 33,196,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11433,009,828 - 33,195,985 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21434,987,299 - 35,141,860 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CIT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,026,809 - 115,220,558 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,025,045 - 115,219,356 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,885,578 - 130,080,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cit
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,750,283 - 13,915,715 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,749,126 - 13,918,222 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008668   ⟹   ENSSTOP00000007769
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936668991,043 - 1,146,294 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000024937   ⟹   ENSSTOP00000016529
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936668991,036 - 1,146,294 (+)Ensembl
RefSeq Acc Id: XM_005336820   ⟹   XP_005336877
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
SpeTri2.0NW_004936668991,043 - 1,146,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005336821   ⟹   XP_005336878
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
SpeTri2.0NW_004936668991,043 - 1,146,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005336822   ⟹   XP_005336879
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
SpeTri2.0NW_004936668991,043 - 1,146,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040289408   ⟹   XP_040145342
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289409   ⟹   XP_040145343
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289410   ⟹   XP_040145344
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289411   ⟹   XP_040145345
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289412   ⟹   XP_040145346
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289413   ⟹   XP_040145347
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,492,141 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289414   ⟹   XP_040145348
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,534,704 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289415   ⟹   XP_040145349
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,554,093 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289416   ⟹   XP_040145350
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,554,292 - 146,649,860 (+)NCBI
RefSeq Acc Id: XM_040289417   ⟹   XP_040145351
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,535,052 - 146,649,860 (+)NCBI
RefSeq Acc Id: XP_005336877   ⟸   XM_005336820
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005336879   ⟸   XM_005336822
- Peptide Label: isoform X9
- UniProtKB: I3MWN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336878   ⟸   XM_005336821
- Peptide Label: isoform X8
- UniProtKB: I3MC26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040145342   ⟸   XM_040289408
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040145343   ⟸   XM_040289409
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040145344   ⟸   XM_040289410
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040145345   ⟸   XM_040289411
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040145346   ⟸   XM_040289412
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145347   ⟸   XM_040289413
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040145348   ⟸   XM_040289414
- Peptide Label: isoform X10
RefSeq Acc Id: XP_040145351   ⟸   XM_040289417
- Peptide Label: isoform X12
RefSeq Acc Id: XP_040145349   ⟸   XM_040289415
- Peptide Label: isoform X11
RefSeq Acc Id: XP_040145350   ⟸   XM_040289416
- Peptide Label: isoform X12
RefSeq Acc Id: ENSSTOP00000007769   ⟸   ENSSTOT00000008668
RefSeq Acc Id: ENSSTOP00000016529   ⟸   ENSSTOT00000024937

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008634 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008668.3 UniProtKB/TrEMBL
  ENSSTOT00000024937.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  Citron_Rho-interacting_kinase UniProtKB/TrEMBL
  CNH_dom UniProtKB/TrEMBL
  CRIK_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Cit ENTREZGENE
PANTHER CITRON RHO-INTERACTING KINASE UniProtKB/TrEMBL
  MYOTONIC DYSTROPHY S/T KINASE-RELATED UniProtKB/TrEMBL
Pfam CNH UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PIRSF Citron_Rho-interacting_kinase UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  CNH UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART CNH UniProtKB/TrEMBL
  S_TK_X UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt I3MC26 ENTREZGENE, UniProtKB/TrEMBL
  I3MWN4 ENTREZGENE, UniProtKB/TrEMBL