Prr5l (proline rich 5 like) - Rat Genome Database

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Gene: Prr5l (proline rich 5 like) Ictidomys tridecemlineatus
Analyze
Symbol: Prr5l
Name: proline rich 5 like
RGD ID: 12450148
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (inferred); INVOLVED IN phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of protein phosphorylation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN TORC2 complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proline rich 5 like, transcript variant X1; proline rich 5 like, transcript variant X2; proline rich 5 like, transcript variant X3; proline rich 5 like, transcript variant X4; proline-rich protein 5-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365331,895,380 - 1,975,824 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365331,895,594 - 1,975,442 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Prr5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365331,895,380 - 1,975,824 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365331,895,594 - 1,975,442 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRR5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381136,296,288 - 36,465,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1136,296,288 - 36,465,204 (+)EnsemblGRCh38hg38GRCh38
GRCh371136,317,838 - 36,486,754 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361136,354,131 - 36,443,330 (+)NCBINCBI36Build 36hg18NCBI36
Celera1136,466,181 - 36,637,921 (+)NCBICelera
Cytogenetic Map11p13-p12NCBI
HuRef1136,017,351 - 36,188,822 (+)NCBIHuRef
CHM1_11136,315,873 - 36,485,532 (+)NCBICHM1_1
T2T-CHM13v2.01136,436,630 - 36,607,651 (+)NCBIT2T-CHM13v2.0
Prr5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392101,543,455 - 101,713,428 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2101,544,630 - 101,713,372 (-)EnsemblGRCm39 Ensembl
GRCm382101,713,110 - 101,883,052 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2101,714,285 - 101,883,027 (-)EnsemblGRCm38mm10GRCm38
MGSCv372101,554,442 - 101,679,137 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362101,517,087 - 101,598,456 (-)NCBIMGSCv36mm8
MGSCv362102,525,319 - 102,608,002 (-)NCBIMGSCv36mm8
Celera2102,939,329 - 103,063,664 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map253.93NCBI
Prr5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83108,458,107 - 108,628,552 (-)NCBIGRCr8
mRatBN7.2388,001,951 - 88,173,532 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,003,617 - 88,082,763 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx391,497,849 - 91,579,208 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,096,877 - 100,178,236 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0397,925,761 - 98,004,913 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0391,290,207 - 91,461,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl391,291,875 - 91,370,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0397,950,297 - 98,119,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4386,868,129 - 86,948,468 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1386,764,033 - 86,844,895 (-)NCBI
Celera387,111,242 - 87,189,435 (-)NCBICelera
Cytogenetic Map3q31NCBI
Prr5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554229,972,588 - 10,048,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554229,972,588 - 10,069,411 (-)NCBIChiLan1.0ChiLan1.0
PRR5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2938,517,112 - 38,686,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11138,521,756 - 38,691,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,269,291 - 36,438,954 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11136,143,905 - 36,311,659 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1136,223,385 - 36,311,659 (+)Ensemblpanpan1.1panPan2
PRR5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11831,708,888 - 31,849,365 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1831,706,546 - 31,849,491 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1831,313,676 - 31,455,863 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01832,316,310 - 32,459,199 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1832,317,883 - 32,387,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11831,886,211 - 32,028,310 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01831,472,745 - 31,613,238 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,108,514 - 32,250,549 (-)NCBIUU_Cfam_GSD_1.0
PRR5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl224,646,871 - 24,812,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1224,646,865 - 24,812,642 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2226,811,301 - 26,949,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRR5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,771,858 - 28,951,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,771,793 - 28,841,572 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038125,912,249 - 126,006,339 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prr5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476710,781,954 - 10,950,243 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476710,781,954 - 10,950,142 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040284500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000029348   ⟹   ENSSTOP00000019378
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365331,895,380 - 1,975,824 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034168   ⟹   ENSSTOP00000029384
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365331,895,380 - 1,975,824 (-)Ensembl
RefSeq Acc Id: XM_021727795   ⟹   XP_021583470
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,846,801 (-)NCBI
SpeTri2.0NW_0049365331,895,594 - 1,971,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284487   ⟹   XP_040140421
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284488   ⟹   XP_040140422
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284489   ⟹   XP_040140423
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284491   ⟹   XP_040140425
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284492   ⟹   XP_040140426
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,850,613 (-)NCBI
RefSeq Acc Id: XM_040284493   ⟹   XP_040140427
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,850,609 (-)NCBI
RefSeq Acc Id: XM_040284494   ⟹   XP_040140428
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284495   ⟹   XP_040140429
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,849,460 (-)NCBI
RefSeq Acc Id: XM_040284496   ⟹   XP_040140430
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,847,317 (-)NCBI
RefSeq Acc Id: XM_040284497   ⟹   XP_040140431
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284498   ⟹   XP_040140432
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284499   ⟹   XP_040140433
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,922,834 (-)NCBI
RefSeq Acc Id: XM_040284500   ⟹   XP_040140434
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494728,770,806 - 28,850,882 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021583470   ⟸   XM_021727795
- Peptide Label: isoform X2
- UniProtKB: I3N4T2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140432   ⟸   XM_040284498
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140428   ⟸   XM_040284494
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140433   ⟸   XM_040284499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140425   ⟸   XM_040284491
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140431   ⟸   XM_040284497
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140422   ⟸   XM_040284488
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140421   ⟸   XM_040284487
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140423   ⟸   XM_040284489
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140434   ⟸   XM_040284500
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140426   ⟸   XM_040284492
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140427   ⟸   XM_040284493
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140429   ⟸   XM_040284495
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140430   ⟸   XM_040284496
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000019378   ⟸   ENSSTOT00000029348
RefSeq Acc Id: ENSSTOP00000029384   ⟸   ENSSTOT00000034168


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022180 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029348.2 UniProtKB/TrEMBL
  ENSSTOT00000034168.1 UniProtKB/TrEMBL
InterPro Bit61/PRR5 UniProtKB/TrEMBL
NCBI Gene Prr5l ENTREZGENE
PANTHER PROLINE-RICH PROTEIN 5-LIKE UniProtKB/TrEMBL
  PTHR32428 UniProtKB/TrEMBL
Pfam HbrB UniProtKB/TrEMBL
UniProt I3N4T2 ENTREZGENE, UniProtKB/TrEMBL